PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939487.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 947aa    MW: 103584 Da    PI: 6.3893
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939487.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32654710259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkg e+prsYYrCt+++Cpvkkkvers  +++v+ei+Y+g+Hnh+
  XP_010939487.1 654 DDGYNWRKYGQKQVKGGEYPRSYYRCTHPKCPVKKKVERSL-EGQVTEIIYKGQHNHS 710
                     8****************************************.***************7 PP
2WRKY105.23.5e-33828886159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYYrCt agC+v+k++er+++dpk+v++tYeg+Hnh+
  XP_010939487.1 828 LDDGYRWRKYGQKVVKGNPHPRSYYRCTNAGCNVRKHIERASTDPKAVITTYEGKHNHD 886
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508144.96E-2387180IPR011038Calycin-like
Gene3DG3DSA:2.40.128.205.2E-3491265IPR012674Calycin
PfamPF122043.6E-1995414IPR022017Domain of unknown function DUF3598
SuperFamilySSF508144.96E-23207265IPR011038Calycin-like
Gene3DG3DSA:2.40.128.206.8E-39287425IPR012674Calycin
SuperFamilySSF508143.07E-29288425IPR011038Calycin-like
Gene3DG3DSA:2.20.25.803.2E-28650712IPR003657WRKY domain
SuperFamilySSF1182901.96E-25651712IPR003657WRKY domain
SMARTSM007741.0E-35653711IPR003657WRKY domain
PfamPF031061.3E-24654709IPR003657WRKY domain
PROSITE profilePS5081122.871654712IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-37813888IPR003657WRKY domain
SuperFamilySSF1182904.71E-29820888IPR003657WRKY domain
PROSITE profilePS5081138.664823888IPR003657WRKY domain
SMARTSM007742.1E-39828887IPR003657WRKY domain
PfamPF031066.4E-26829886IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MAETLIPTCT RGIPSNFQNS RSSTAPRRRF PAPVTSIYGH SYPKTAFGFP TRSFGVQRRV  60
LRAEAASSSS AVGEETKGHE ESMGIDALHR FIDLNLGKWN GSFYQFDAQG NLLQTVSTKL  120
SASSYGEDEL ISLIQTLYVK QPPSCTSIAG YDSEPEWTEY KIKETNMFTV DKYQQIGFFP  180
REKAFSLRYQ TAGMLETVLR AGVLGEDDTG EETPRNLKIP SHQPSVVCEN CLYSLKKDMR  240
ARAFHIMDPK GVLEMLLIFL EERGNEERGN EAPNIMSCCS FKDISDKLSP LLGRWEGHSI  300
TKRSGVYGAT VAKVDTVALL EMDDEGQLIQ DITSTTTGSS TTTNVHWTGT VSNNLVSFDG  360
GFQLTLLPGG MYMGCPRDIG RSVAQSQSFH LEFCWMESPE KRQRLVRTYD MEGLAVSSAY  420
FYEIKMAERD GGAPKAAAAA PPPPWPTIAL PHWSSMEGLF RGSGAADVSP GPMTLVSSFF  480
AEDPEEYRCF SQILAGVIDS PVAPPPSRPA AEQPAAPTEG DTGGVEEMGL RQNHSPLVAA  540
TPGLSLSSLL ESPAGLISSN LGYFGISHQQ APAQVTSQAV ESHSYVHVQA EYPSLAAAST  600
SSALPPGSSI NMSSLQQMPP LLLDTNNATI NSADGSHSDH KSQPAAFMVD KPADDGYNWR  660
KYGQKQVKGG EYPRSYYRCT HPKCPVKKKV ERSLEGQVTE IIYKGQHNHS PPSQCRRSKE  720
GGTFPSGCNE LNGSFDFPLN PETGTANFSR STETMSKRDR DSSHWTPEQL SGSSEGEGDG  780
EPGTDEGGDT EQDPKRRNMD TRVMESSSHK TVTEPRIIVQ TTSEVDLLDD GYRWRKYGQK  840
VVKGNPHPRS YYRCTNAGCN VRKHIERAST DPKAVITTYE GKHNHDVPAA RNSSHATANA  900
GAATSSIPPR AQNANPGSQP SFQETEFINN VRRPVAVYLL KKEHDAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-164744269357BFA1
5yvf_B1e-164744269357BFA1
5yvf_C1e-164744269357BFA1
5yvf_D1e-164744269357BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019703691.10.0probable WRKY transcription factor 4
TrEMBLV4SZH60.0V4SZH6_9ROSI; Uncharacterized protein
STRINGXP_006431265.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-109WRKY DNA-binding protein 3