PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939524.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 248aa    MW: 27423.8 Da    PI: 7.0942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939524.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-063685154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +++ + +rE+  Rd++N++f+eL   + +a     + + Ka+iL  A++ +++L
  XP_010939524.1 36 KKEHKAKREKLKRDHLNERFSELGHAVEPA----RQNNGKASILGDATRLVQDL 85
                    5778899**********************9....67899999**9999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.6683585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-123599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1135104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-43685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00454191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVTEPPSSMT NDGNIVAEQP VGGSIPNKKN KGKVPKKEHK AKREKLKRDH LNERFSELGH  60
AVEPARQNNG KASILGDATR LVQDLIQQVE SLKKENAALV TESHYVAVEK NELKDENTVL  120
GAEIERLRNE LHERMHSNPM WHDGAEVALP APPQPTAAAL PMQQPPVGPL YVIPLHQELH  180
PFSETGDAPA PPKHPSHVRR PHARYPTPSD SWPLELLSRH QRAAHEAQHK GSSSCMTSNR  240
GEEGADEV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939524.10.0transcription factor BHLH062
RefseqXP_010939525.10.0transcription factor BHLH062
SwissprotQ69V102e-50BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A2H3Z3X51e-137A0A2H3Z3X5_PHODC; transcription factor BHLH062-like
STRINGXP_008807714.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.38e-29bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]