PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939598.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 365aa MW: 40893.4 Da PI: 8.8557

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939598.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5.3e-11	75	117	2	41
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +++k+ rr+++NReAAr+sR+RKka++++Le k ++Le+e XP_010939598.1 75 PADKVVRRLAQNREAARKSRLRKKAYVQQLESsriKLAQLEQE 117 6799**************************9722244555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	71	123	No hit	No description
SMART	SM00338	4.0E-7	74	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-8	76	114	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.91	76	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-7	78	119	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.5E-31	165	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MSSTSAHFAT SRRMAVYQPN HQISMWGNSF KADISQNTGA STIVEADTKL DNRLEDIPRE 60 SLGPSKRYDQ EANKPADKVV RRLAQNREAA RKSRLRKKAY VQQLESSRIK LAQLEQELER 120 ARQQGVYIGG HLGDATLGLP GTVNSGVAAF EMEYGHWVEE QNRQTRELRA ALQAHVSDIE 180 LHMLVESGMS HYDDLFRIKA IAAKSDVFYL MSGMWKTAVE RFFLWIGGFR PSELLKVLTS 240 QLDPLTEQQL VAVHNLQLSS QQAEYALSQG MDRLQQTIVE TLASDLLGAS GAANCMGQMA 300 NAMGELEALV SFVNQADHLR QQALQQMYKI LTTRQAARAL LALGDYFQRL RALSSLWAAR 360 PREPA

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MSSTSAHFAT SRRMAVYQPN HQISMWGNSF KADISQNTGA STIVEADTKL DNRLEDIPRE  60
SLGPSKRYDQ EANKPADKVV RRLAQNREAA RKSRLRKKAY VQQLESSRIK LAQLEQELER  120
ARQQGVYIGG HLGDATLGLP GTVNSGVAAF EMEYGHWVEE QNRQTRELRA ALQAHVSDIE  180
LHMLVESGMS HYDDLFRIKA IAAKSDVFYL MSGMWKTAVE RFFLWIGGFR PSELLKVLTS  240
QLDPLTEQQL VAVHNLQLSS QQAEYALSQG MDRLQQTIVE TLASDLLGAS GAANCMGQMA  300
NAMGELEALV SFVNQADHLR QQALQQMYKI LTTRQAARAL LALGDYFQRL RALSSLWAAR  360
PREPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939598.1	0.0	transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-160	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2H3YW29	0.0	A0A2H3YW29_PHODC; transcription factor TGA2.2-like isoform X1
STRING	XP_008804505.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-137	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]