PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939626.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 359aa    MW: 38763.2 Da    PI: 6.7921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939626.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19180229255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a+++a+ +l+g
  XP_010939626.1 180 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDAAEEAALAYDKAAFRLRG 229
                     59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-32179239No hitNo description
PROSITE profilePS5103222.669180237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-31180238IPR001471AP2/ERF domain
SMARTSM003801.7E-36180243IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22180238IPR016177DNA-binding domain
PfamPF008476.2E-13181229IPR001471AP2/ERF domain
PRINTSPR003672.1E-10181192IPR001471AP2/ERF domain
PRINTSPR003672.1E-10203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAAAIDLYSS HPVFSSDPFS EELMKALEPF IRGASMTSSS PSPSPSSSST PETTPSFPSS  60
PYPASSTPSP TLCSSSYPFS TPSSSISPYP APQNSILDCS SPGFLGFDPS NVSRPSPIGL  120
NHLSAAQIQQ IQAQIQFQQQ QSLLAARQVL QGHAAPSFLG PRPQPMKHAG SPPPPRPTKL  180
YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DAAEEAALAY DKAAFRLRGD FARLNFPHLR  240
HEIARAAGGP LHSSVDAKLQ AICQSLANSP KQGTPLPPSC TLQPVPDAGR RPNVAKSEPG  300
VEDYKSESSS EGGEDSSSGS SPASEMQHLD FTEAPWDELE SFALRKYPSW EIDWDSILA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20179237160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-20179237463ATERF1
3gcc_A4e-20179237463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939626.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A2H3ZQ130.0A0A2H3ZQ13_PHODC; ethylene-responsive transcription factor RAP2-13-like
STRINGXP_008790815.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-50related to AP2 4