PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939814.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 394aa    MW: 43647.1 Da    PI: 6.9532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939814.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-16120165147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
   XP_010939814.1 120 RGHWRPAEDSKLRELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165
                      899*****************************.***********996 PP
2Myb_DNA-binding54.23.4e-17172215146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_010939814.1 172 RRAFSEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAIKNHWHV 215
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.328115166IPR017930Myb domain
SMARTSM007174.6E-14119168IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-27120213IPR009057Homeodomain-like
PfamPF002491.6E-15120165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-25121173IPR009057Homeodomain-like
CDDcd001674.37E-13123164No hitNo description
PROSITE profilePS5129426.821167221IPR017930Myb domain
SMARTSM007171.9E-14171219IPR001005SANT/Myb domain
PfamPF002495.0E-14172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-21174220IPR009057Homeodomain-like
CDDcd001671.03E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MALQQRGGNE GMETRCGFRS YSSSPFSSIG VFAAIGSLSI NPTASVGSYH CTKSSDKTSW  60
TFQFMQKSEV GNNCFDGIDG AGEEEPNAIG EESPDAENTN ESSQGGKETV DCGQSKLCTR  120
GHWRPAEDSK LRELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE  180
EKLMAAHRLY GNKWAMIARL FPGRTDNAIK NHWHVIMARK YREQSNAYRR RKLSHDVQRR  240
LEDGATTTAT AAVSVFGHCP SPSSPFAAAI SGSIGLHHMT LGAGDSVSSH NGFYTEQTPF  300
DFLSGKEGHD KANFHSRSSW DRPRDESMRF YHYPPFMLAM QQSSHASHYS DSTALAASRV  360
SAIESSSSEE NRESSHFEAT ISPPFIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321202207107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939814.10.0transcription factor MYB52
TrEMBLA0A2H3YRL40.0A0A2H3YRL4_PHODC; transcription factor CSA-like
STRINGXP_008802623.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-75myb domain protein 105