PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939827.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 270aa MW: 31123.6 Da PI: 8.8444

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939827.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.3e-50	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+++ ++++ ++i+ev+i+k++Pw+Lp k +e wyfFs+rd ky++g r+nrat+sgyWkatg+dk+++s XP_010939827.1 5 LPPGFRFHPTDEELIIYYLRNHGMLVPCPI-SIIPEVNICKFDPWELPGKSFLREGVWYFFSPRDLKYPNGGRPNRATASGYWKATGTDKAIYS- 97 79**************************.89***********66556788**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+gr pkg+kt+W+mheyrl XP_010939827.1 98 NSKHVGVKKALVFYRGRPPKGSKTEWIMHEYRL 130 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-63	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	56.686	5	158	IPR003441	NAC domain
Pfam	PF02365	3.9E-27	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNFELPPGFR FHPTDEELII YYLRNHGMLV PCPISIIPEV NICKFDPWEL PGKSFLREGV 60 WYFFSPRDLK YPNGGRPNRA TASGYWKATG TDKAIYSNSK HVGVKKALVF YRGRPPKGSK 120 TEWIMHEYRL AQPTTNGALK PNKSTRVEEW VLCRIHQKKQ SKRITDDGQE DSFVKETPHM 180 KITSNLEEKV PIFPRSSCTF AHLLEPDFIL DSQLFDESQF GPIDGLFDTN RSDRPADMVK 240 FLQADAMKPV GSDQSLRIKH PIFVDPIFHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-62	2	163	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-62	2	163	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-62	2	163	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-62	2	163	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-62	2	161	17	171	NAC domain-containing protein 19
3swm_B	2e-62	2	161	17	171	NAC domain-containing protein 19
3swm_C	2e-62	2	161	17	171	NAC domain-containing protein 19
3swm_D	2e-62	2	161	17	171	NAC domain-containing protein 19
3swp_A	2e-62	2	161	17	171	NAC domain-containing protein 19
3swp_B	2e-62	2	161	17	171	NAC domain-containing protein 19
3swp_C	2e-62	2	161	17	171	NAC domain-containing protein 19
3swp_D	2e-62	2	161	17	171	NAC domain-containing protein 19
4dul_A	3e-62	2	163	14	170	NAC domain-containing protein 19
4dul_B	3e-62	2	163	14	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939827.1	0.0	NAC domain-containing protein 2 isoform X1
Swissprot	K4BNG7	1e-85	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2I0WGH3	1e-103	A0A2I0WGH3_9ASPA; NAC transcription factor 29
STRING	PGSC0003DMT400007341	2e-87	(Solanum tuberosum)
STRING	XP_008780790.1	3e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-84	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]