PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939828.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 261aa MW: 30136.5 Da PI: 9.2733

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939828.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.2	9.1e-42	5	121	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+++ ++++ ++i+ev+i k+ L +e wyfFs+rd ky++g r+nrat+sgyWkatg+dk+++s XP_010939828.1 5 LPPGFRFHPTDEELIIYYLRNHGMLVPCPI-SIIPEVNIWKS---FL------REGVWYFFSPRDLKYPNGGRPNRATASGYWKATGTDKAIYS- 88 79**************************.89**985...45......4568*********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+gr pkg+kt+W+mheyrl XP_010939828.1 89 NSKHVGVKKALVFYRGRPPKGSKTEWIMHEYRL 121 999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-54	3	149	IPR003441	NAC domain
PROSITE profile	PS51005	46.693	5	149	IPR003441	NAC domain
Pfam	PF02365	6.7E-27	6	121	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MNFELPPGFR FHPTDEELII YYLRNHGMLV PCPISIIPEV NIWKSFLREG VWYFFSPRDL 60 KYPNGGRPNR ATASGYWKAT GTDKAIYSNS KHVGVKKALV FYRGRPPKGS KTEWIMHEYR 120 LAQPTTNGAL KPNKSTRVEE WVLCRIHQKK QSKRITDDGQ EDSFVKETPH MKITSNLEEK 180 VPIFPRSSCT FAHLLEPDFI LDSQLFDESQ FGPIDGLFDT NRSDRPADMV KFLQADAMKP 240 VGSDQSLRIK HPIFVDPIFH H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-54	2	154	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-54	2	154	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-54	2	154	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-54	2	154	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	8e-54	2	152	17	171	NAC domain-containing protein 19
3swm_B	8e-54	2	152	17	171	NAC domain-containing protein 19
3swm_C	8e-54	2	152	17	171	NAC domain-containing protein 19
3swm_D	8e-54	2	152	17	171	NAC domain-containing protein 19
3swp_A	8e-54	2	152	17	171	NAC domain-containing protein 19
3swp_B	8e-54	2	152	17	171	NAC domain-containing protein 19
3swp_C	8e-54	2	152	17	171	NAC domain-containing protein 19
3swp_D	8e-54	2	152	17	171	NAC domain-containing protein 19
4dul_A	7e-54	2	154	14	170	NAC domain-containing protein 19
4dul_B	7e-54	2	154	14	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939828.1	0.0	NAC domain-containing protein 2 isoform X2
Swissprot	K4BNG7	2e-76	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2I0WGH3	8e-93	A0A2I0WGH3_9ASPA; NAC transcription factor 29
STRING	PGSC0003DMT400007341	6e-78	(Solanum tuberosum)
STRING	XP_010258043.1	5e-78	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-75	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]