PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939858.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 350aa    MW: 39634.9 Da    PI: 4.5897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939858.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-1995144255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_010939858.1  95 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 144
                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.02E-2295152IPR016177DNA-binding domain
PROSITE profilePS5103224.23695152IPR001471AP2/ERF domain
CDDcd000185.07E-3395154No hitNo description
SMARTSM003805.7E-3895158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3295153IPR001471AP2/ERF domain
PRINTSPR003679.9E-1296107IPR001471AP2/ERF domain
PfamPF008471.6E-1196144IPR001471AP2/ERF domain
PRINTSPR003679.9E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAIISDF MLPPTASRRL TADYRWPGLK KGGGRKKKGR KHEVVEFDDD FEADFEDFKD  60
ESEEDEEEVD VKPFAFASKA TFSRARSAKR KRKNQYRGIR QRPWGKWAAE IRDPRKGVRV  120
WLGTFNTAEE AARAYDVEAR RIRGKKAKVN FPEASASAQK QNQKPTLQAP KPALSEEQKL  180
NDQDYDLYST MDHMEVKEPA DPEYMNSLPS VESSPPPEGT GILNFLSDQG SNTVDYSDLG  240
WEHETKNPEI TSVLAPTITE GDESRFLEHG SPQKNLKITS DDAVQTEENS AMKLSEELSA  300
SESHMKFLIP YLEWSAYESV DSLFSCEVDQ DGLSTMDLWS FDDLPTESIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2195152260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939858.10.0ethylene-responsive transcription factor 1 isoform X2
TrEMBLA0A2H3YLB71e-159A0A2H3YLB7_PHODC; ethylene-responsive transcription factor 1-like isoform X2
STRINGXP_008800471.11e-156(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-35related to AP2 12