PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939934.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YA

Protein Properties

Length: 328aa MW: 35655.6 Da PI: 9.1517

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939934.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.5	1.9e-32	174	230	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF XP_010939934.1 174 EEPIYVNAKQYRAILRRRQLRAKLEAQNKL-IKARKPYLHESRHLHAMKRARGSGGRF 230 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.3E-38	172	233	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.017	173	233	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.9E-27	175	230	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-23	176	198	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	178	198	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.2E-23	207	230	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MPLDNANAFD TQHFSNKDSE HSSVTSVHSA SNCVDNFPSL WKQSGSHFPQ STYFKNFCMN 60 MGFLAQPDNQ MKQLGGQMPD QDSSSSQSTG QSHQEVSGTS EGNLHEQSIS AQAGNDKTCG 120 KQVEGHVNSV LFLGTPEAAF VSPRLDYGQS FIHPQMVGVP PSSRVPLPLE PAAEEPIYVN 180 AKQYRAILRR RQLRAKLEAQ NKLIKARKPY LHESRHLHAM KRARGSGGRF LNTKQLEQQQ 240 QRPLLPPPPS VSTGLGNLSA SNLHFENGPS GSSAAPTSSA DVVRVSTSGG MLEQQGHLSF 300 LSADFHSHVR STQGGGDSGS QPRITIMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	174	235	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939934.1	0.0	nuclear transcription factor Y subunit A-3 isoform X2
Swissprot	Q9LVJ7	4e-40	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A2H3XRW4	1e-180	A0A2H3XRW4_PHODC; nuclear transcription factor Y subunit A-6-like
STRING	XP_008787861.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	8e-32	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]