PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939969.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 434aa MW: 47986.4 Da PI: 9.3187

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939969.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_010939969.1 63 YVCEICNQGFQRDQNLQMHRRRH 85 9*********************9 PP
2	zf-C2H2	14.7	8.7e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k + +s++k H++t+ XP_010939969.1 140 WVCARCSKAYAVQSDYKAHLKTC 162 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.71E-5	60	86	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	63	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.6E-4	131	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	160	140	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MLGSTMPAAP ALPSDNNIMT SSSFPCLENG TNSKRKRRPA GTPDPDAEVV SLSPRTLLES 60 DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDAAEVR KRVFVCPEPS CLHHDPCHAL 120 GDLVGIKKHF RRKHSSHKQW VCARCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES 180 FIEHQDACNA GRARADLHQT PPRACRSRAA SSPSPSSDTN FSSGAPAWPS LRTPASTSAF 240 QPPPPSDHRR PHSLELQLLL PASNPHPMTT TVTSPTLSPA SDEAHATKLQ LSIGPSGSKR 300 APVNGELTSA IHDKDQEKLR RAMTEKALAD EGRLQARRQV ELAEMEFADA KRIRQQAMAE 360 LENACVIRDN TMKRINSILL QITCHACRQP FRANSVMPAD ESSLAVVSFV SSVVTEGEGD 420 ENSNPRYPVK IFKT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MLGSTMPAAP ALPSDNNIMT SSSFPCLENG TNSKRKRRPA GTPDPDAEVV SLSPRTLLES  60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDAAEVR KRVFVCPEPS CLHHDPCHAL  120
GDLVGIKKHF RRKHSSHKQW VCARCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQDACNA GRARADLHQT PPRACRSRAA SSPSPSSDTN FSSGAPAWPS LRTPASTSAF  240
QPPPPSDHRR PHSLELQLLL PASNPHPMTT TVTSPTLSPA SDEAHATKLQ LSIGPSGSKR  300
APVNGELTSA IHDKDQEKLR RAMTEKALAD EGRLQARRQV ELAEMEFADA KRIRQQAMAE  360
LENACVIRDN TMKRINSILL QITCHACRQP FRANSVMPAD ESSLAVVSFV SSVVTEGEGD  420
ENSNPRYPVK IFKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-18	138	190	5	57	Zinc finger protein JACKDAW
5b3h_F	9e-18	138	190	5	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:16813575, ECO:0000269\|PubMed:18259878, ECO:0000269\|PubMed:24039602, ECO:0000269\|PubMed:9210330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939969.1	0.0	protein indeterminate-domain 16
Swissprot	F4IPE3	1e-147	IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBL	A0A2H3ZP61	0.0	A0A2H3ZP61_PHODC; protein indeterminate-domain 16-like
STRING	XP_008787889.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-123	indeterminate(ID)-domain 14

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim JY,Ryu JY,Baek K,Park CM High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis. New Phytol., 2016. 209(1): p. 265-79 [PMID:26256266] Ryu JY,Kim JY,Park CM Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1093715 [PMID:26452406] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128] Shi H, et al. Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17. J. Pineal Res., 2018. 65(2): p. e12494 [PMID:29607541]