PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940038.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 179aa    MW: 20193.3 Da    PI: 9.6091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940038.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-091365455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                      + +E++RR +++s   +L +l+Pk   ++++  l+  + L +A+ YIk+Lq
  XP_010940038.1 13 ERKTVEKNRRLHMKSLCLKLSSLIPKeHISTSKDVLTQQDHLDLATSYIKMLQ 65
                    56889*********************665666666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-10476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.696964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-91180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-61465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.61E-41769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKSSSSGSAA KMERKTVEKN RRLHMKSLCL KLSSLIPKEH ISTSKDVLTQ QDHLDLATSY  60
IKMLQDRIEK LKQRRELQTS VEGISNDISR EMTIGIRLPV IEVRHQDSNL EVVLITGLNK  120
SFMFHEVISI LEEEGAEVVS ASFSAVGDKI FHIIHSKAVS SRIGMEASRV SERLKELVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940038.11e-125transcription factor bHLH162
TrEMBLA0A2H3XS241e-110A0A2H3XS24_PHODC; transcription factor bHLH162
STRINGXP_008787951.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-28bHLH family protein