PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940145.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 726aa    MW: 83160.8 Da    PI: 6.5736
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940145.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.65.1e-24103187290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      YneYAk++GF vrk+  ++sk+n+e++ +++vC++egk + ++k+    + +++  rtgC a lkvk++ +++w+v ++ +eHnHel 
  XP_010940145.1 103 LYNEYAKDMGFGVRKKLCRRSKTNNEMIAAWYVCTREGKIAASEKA----ECSQSARRTGCCAALKVKRMANKEWKVVHFAKEHNHELD 187
                     7****************************************99888....889999*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-21103188IPR004330FAR1 DNA binding domain
PfamPF105513.9E-32299392IPR018289MULE transposase domain
PfamPF044342.0E-9590625IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.423590626IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-8601628IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MESTNDGSSQ KLANVDDIEL AAETGLADDD DDDDDDDDDD EEEEEGEEAS IIRDSAAIEL  60
GDPNTSTDLE VNSLAGNLEE VGGTRSEPSI GMMFQSAVAA YRLYNEYAKD MGFGVRKKLC  120
RRSKTNNEMI AAWYVCTREG KIAASEKAEC SQSARRTGCC AALKVKRMAN KEWKVVHFAK  180
EHNHELDPEN VCLFRSHMKN RMHNKNRINK AGVGHKYTTS ASSKQSGGQD GECQNLVDRG  240
QRRFFAPADA HAIHMLFIHM HSKNPAFFYA VDFDEEQHLK NVLWADAKAK VAYTHFGDVV  300
TFDTTYLTDG YKLPFAPFVG VNHHGQTVLL GCALLADQST ASFVWLFKTW LDAMSGRPPK  360
AIITDYNKDI AAAMSQLFPE THHRYCLWHI LKRVPEKLGD VCEARENFLK KLNKCIYDST  420
TAVEFERRWW NLIHRFGLAN EEWLQSLYKD RQQWVPLYLK DTFFAGMSIS QRNESVSTIF  480
HKFITRETGL KEFLDKYEVA LESKFEDEAQ EDFWSFHSKT KEITHPSPFE LQLADVYTRN  540
MFEKFQMEVL GISSVFASKV EENGDIATYM VKAYEVQEKM KARRLLEKEY QVVWNAIERK  600
IRCACRLFEF KGYLCRHALA VFLALGVLEV PSSYILKRWT KDAKSRHVLD EGYTVHGDCS  660
ESVAQRFNDI CVRSFKFAEE ASLTKRSYDV ALLALQEAFR RVTHANNSVR KSRQRNYPHN  720
GGRSNK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940145.10.0protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A3Q0IA200.0A0A3Q0IA20_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
STRINGXP_008796002.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-173FAR1 family protein