PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940199.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ZF-HD

Protein Properties

Length: 173aa MW: 18663.8 Da PI: 7.4086

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940199.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	68.6	1e-21	8	53	4	54
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHR 54 +Y+eC++NhAa+lG++a DGC+E++p+ + C+ACgCHRnFH XP_010940199.1 8 EVYRECMRNHAARLGAYASDGCCEYIPD-----ALHPNICTACGCHRNFHP 53 57***********************8.....578999*********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.4E-17	9	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.6E-15	10	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-13	10	52	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.827	10	55	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.69E-13	56	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-23	57	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.2E-27	68	128	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MEPARLSEVY RECMRNHAAR LGAYASDGCC EYIPDALHPN ICTACGCHRN FHPSTSEGGP 60 PGEILRARRR RRTKFTAEQK ARMAAFAAQI GWKVQKRDQC GGQDEVSRFC EEVGITRQVF 120 KIWIHNHKGG AFAASTSAAG NSTTAAGADW EGEGGGGSEG GEVEEEIKGS ASM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	4e-18	68	128	17	73	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	RRRRRT

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026662277.1	9e-70	zinc-finger homeodomain protein 11-like
Swissprot	Q9SB61	2e-30	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A3Q0IA92	2e-68	A0A3Q0IA92_PHODC; zinc-finger homeodomain protein 11-like
STRING	XP_008787971.1	4e-66	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-30	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]