PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940201.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 292aa MW: 32225.5 Da PI: 8.8511

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940201.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.4	1.8e-29	239	290	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ + XP_010940201.1 239 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVF 290 9*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-14	236	291	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-25	237	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	239	291	IPR006447	Myb domain, plants
Pfam	PF00249	6.3E-6	240	288	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPIQGIFMET TSMPSLDLSL HISPPSPTPS STPATDRDPS LGLLHRIEAL KPQAEDRSNL 60 LACTHLSLSS SSASLEADGS WRWQGPQHDR CQNSHLESVL DGSRPIKGIP IYSSSNPPFL 120 SADPEMGFNH QTLSSPSSWS SFFSSTPSPP PSSCGYSTHL DTMSSFLRSA GLVPSMGSSY 180 HRMMAPPTRF TGLSSDTIKY NQHYSHHQQH GIGPLDISQN MMRSRFMQKL PAKRSVRAPR 240 MRWTSSLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQVF FV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	240	290	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269\|PubMed:18594992}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940201.1	0.0	transcription repressor KAN1
Swissprot	Q0J235	3e-35	ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBL	A0A2H3ZP57	1e-166	A0A2H3ZP57_PHODC; probable transcription factor RL9
STRING	XP_008798291.1	1e-116	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2558	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-36	G2-like family protein