PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940212.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 192aa MW: 21142.7 Da PI: 5.1505

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940212.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	176.5	1.7e-54	8	161	4	167
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + +eq+ yvqC+fC+t+l+vsvP +sl+kvvtvrCGhC+ llsv+l + + + +l ++ ++++++ee + + ++ + XP_010940212.1 8 LELPEQLGYVQCSFCTTVLLVSVPCSSLLKVVTVRCGHCAGLLSVSLVRTDFV-PL------QLLGSIGNDEEKHEECTV----DDPPGRACEDG 91 6789**************************************998765533.22......223334444443333332....22222222222 PP YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++ne+++ p + p v++PPekrqr+Psaynrfikeeiqrika+ P+i+hreafs+aaknWahfP++ XP_010940212.1 92 DDEEDNEKKSPPDQTPvVNKPPEKRQRAPSAYNRFIKEEIQRIKAKEPNITHREAFSTAAKNWAHFPRVQ 161 222345555555444449***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-61	11	162	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	104	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-5	111	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSTDNSFLEL PEQLGYVQCS FCTTVLLVSV PCSSLLKVVT VRCGHCAGLL SVSLVRTDFV 60 PLQLLGSIGN DEEKHEECTV DDPPGRACED GDDEEDNEKK SPPDQTPVVN KPPEKRQRAP 120 SAYNRFIKEE IQRIKAKEPN ITHREAFSTA AKNWAHFPRV QAKGHGESCS TGEGENDGEM 180 DGRSQGICKK KP

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029124405.1	1e-120	protein YABBY 7-like
Swissprot	Q9LDT3	1e-48	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2H3ZE98	6e-96	A0A2H3ZE98_PHODC; protein YABBY 7
STRING	XP_008812180.1	1e-96	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13625	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-38	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]