PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940231.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 478aa MW: 52293.4 Da PI: 6.0666

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940231.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+e++++a k++G W++I +++g ++t+ q++s+ qk+ XP_010940231.1 59 RERWTEEEHEKFLEALKLHGRA-WRRIEEHIG-TKTAVQIRSHAQKF 103 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.24E-16	53	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.969	54	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-10	56	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-16	57	106	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-13	58	106	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-14	59	102	IPR001005	SANT/Myb domain
CDD	cd00167	9.42E-11	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MEVQEKSGRP SLDPIHIPDR RMCVDVTSAV IGHQSKEFSS LVDEHAIKVR KPYTITKQRE 60 RWTEEEHEKF LEALKLHGRA WRRIEEHIGT KTAVQIRSHA QKFFSKVVRE PGTAKAIDIP 120 PPRPKRKPLH PYPRKLGNLP SKGLPILEQP AWSSPSVPSV FESENSSPVS VLSAAGSDTI 180 GSTISNPPDG CESPTPSVED ENRPASTCFV TEDKSQMEVD LSSKDETPSK EGSPIETQAT 240 CLKLFGTTVF VTDAQKPCFS SVGNTMHSRT SLPNIDNISH NVCMDMDLQT PTKPVPQTPA 300 QDDFWGGAGK SAWSPWKGGN SPMFYCLPSK GDLTKSTEAA SSLPWWWAFD GTLPIFPFII 360 VPQHTSSTQS QPQTCTEASD DKDSQKEGSW TGSNTAYAGR AGIGDENSDV VDSQQNAEHL 420 KEPAPASRLF GSLTVNTDGS PSGFVPYKRC LAEKQAEQHS QMVNEERGAQ AVAVALCL

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MEVQEKSGRP SLDPIHIPDR RMCVDVTSAV IGHQSKEFSS LVDEHAIKVR KPYTITKQRE  60
RWTEEEHEKF LEALKLHGRA WRRIEEHIGT KTAVQIRSHA QKFFSKVVRE PGTAKAIDIP  120
PPRPKRKPLH PYPRKLGNLP SKGLPILEQP AWSSPSVPSV FESENSSPVS VLSAAGSDTI  180
GSTISNPPDG CESPTPSVED ENRPASTCFV TEDKSQMEVD LSSKDETPSK EGSPIETQAT  240
CLKLFGTTVF VTDAQKPCFS SVGNTMHSRT SLPNIDNISH NVCMDMDLQT PTKPVPQTPA  300
QDDFWGGAGK SAWSPWKGGN SPMFYCLPSK GDLTKSTEAA SSLPWWWAFD GTLPIFPFII  360
VPQHTSSTQS QPQTCTEASD DKDSQKEGSW TGSNTAYAGR AGIGDENSDV VDSQQNAEHL  420
KEPAPASRLF GSLTVNTDGS PSGFVPYKRC LAEKQAEQHS QMVNEERGAQ AVAVALCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940231.1	0.0	protein CCA1
TrEMBL	A0A2H3ZEW5	0.0	A0A2H3ZEW5_PHODC; protein CCA1-like isoform X1
STRING	XP_008812464.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	2e-35	MYB_related family protein