PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940655.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 173aa    MW: 19719.2 Da    PI: 9.9621
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940655.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-16107152247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ l++++ + +G+g+Wk+I+r+   ++t+ q+ s+ qk+
   XP_010940655.1 107 KPWTEEEHRLFLQGLATYGKGDWKSISRHAVVTKTPVQVASHAQKF 152
                      58******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.704660IPR017877Myb-like domain
SuperFamilySSF466893.66E-9767IPR009057Homeodomain-like
SMARTSM007170.0161062IPR001005SANT/Myb domain
PROSITE profilePS5129419.18101157IPR017930Myb domain
SuperFamilySSF466897.9E-17103157IPR009057Homeodomain-like
SMARTSM007171.7E-12105155IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.2E-16107156IPR006447Myb domain, plants
PfamPF002493.8E-13107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-11107148IPR009057Homeodomain-like
CDDcd001672.32E-11108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDSSHDIGLS PAEWSPFEEM VLELALLANP EGTSDRWSRI SANFSRKSPE QILYHHYQIL  60
KDDLQKKEGG NFGDGCSMGM APEQRPPKGQ NTSFGSGRRG LERRKAKPWT EEEHRLFLQG  120
LATYGKGDWK SISRHAVVTK TPVQVASHAQ KFFIRQKQDM ERKRKSIHDV TNP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710929.11e-118transcription factor SRM1-like
TrEMBLA0A3Q0I0I63e-59A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like
STRINGXP_008789580.14e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-40MYB family protein