PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940672.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 226aa    MW: 24531.4 Da    PI: 4.9458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940672.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1761108354
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa+a++aa++ l+
  XP_010940672.1  61 FRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSLEAAQAYDAAARGLY 108
                     8****999.**********8...3.35*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3160123IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1960118IPR016177DNA-binding domain
PfamPF008473.8E-1260105IPR001471AP2/ERF domain
PROSITE profilePS5103220.90360117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2861119IPR001471AP2/ERF domain
PRINTSPR003673.4E-96172IPR001471AP2/ERF domain
CDDcd000184.31E-1861119No hitNo description
PRINTSPR003673.4E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MPSALEPKPS SSLPIVDQYW MVGAVPMGPE EKKHKKYCPL RRSRKGCMKG KGGPENQACA  60
FRGVRQRTWG KWVAEIREPN RGARLWLGTF NTSLEAAQAY DAAARGLYGD CARLNLPNSS  120
SVGSASVKSE ISCSPSASAR TNTSESRVSF PDSSIESPTY FYGGGGGGGL DDLDDYVTRL  180
PKAEDFGLEA FQDVPMFDDV GYSSLVFDEE LMGFDALQSS WCPLAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15611241579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940672.11e-167dehydration-responsive element-binding protein 2C
SwissprotQ84ZA11e-59DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A2H3XW551e-107A0A2H3XW55_PHODC; dehydration-responsive element-binding protein 2C-like
STRINGXP_008789576.11e-107(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-40ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]