PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940754.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 292aa    MW: 32453.4 Da    PI: 7.3618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940754.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G  +W++++ + g+ R +k+c++rw +yl
   XP_010940754.1 15 KGLWSPEEDQKLRDYILEHGHSCWSAVPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding53.36.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+e+ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl
   XP_010940754.1  68 RGIFSQEEEEIVINLQARLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                      6889******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0211062IPR017930Myb domain
SuperFamilySSF466891.54E-2712109IPR009057Homeodomain-like
SMARTSM007176.4E-111464IPR001005SANT/Myb domain
PfamPF002492.1E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-221669IPR009057Homeodomain-like
CDDcd001677.51E-101862No hitNo description
PROSITE profilePS5129425.68763117IPR017930Myb domain
SMARTSM007174.6E-1667115IPR001005SANT/Myb domain
PfamPF002491.2E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2570118IPR009057Homeodomain-like
CDDcd001671.90E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGCRSCEKPK VNYRKGLWSP EEDQKLRDYI LEHGHSCWSA VPVKAGLQRN GKSCRLRWIN  60
YLRPGLKRGI FSQEEEEIVI NLQARLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKKVIKA  120
QGSHPHGSAT KSLELTNKNL LNHKETNNQI PSSQSLEPPE LSTADSGLSL KHSMEFGSFK  180
GTTHHHLPKV LFADWLSVDQ VIEQGSGSFG GAASTPWNSN NSNVDEVLRP GSSEVIGQSN  240
SDFLSGFGDT GIYDELQAQF EPVGQIPGDA FFDLFTMGKI PGSLGMNHDA IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24911723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940754.10.0transcription factor LAF1-like
TrEMBLA0A2H3X8V00.0A0A2H3X8V0_PHODC; transcription repressor MYB6-like
STRINGXP_008780142.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.14e-58myb domain protein 18