PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940793.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 343aa MW: 38245.7 Da PI: 7.4272

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940793.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.3e-32	167	220	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_010940793.1 167 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 220 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-15	164	221	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-29	165	221	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-23	167	221	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	168	219	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MELFPAQPDL SLHISPPSSN PTPSWRRADE NMDLGFWQRT TDSTTTNHHS ITTLSMAKAE 60 KTAFELSLAH PSATDSNTMS NNLLQHPHHH PLVHEGYHQV LGLTRPIRGI PVYQHQPNSF 120 PLVPQLQQQH LCDSSTPTGF APFAPQGASR SRYLPSRFPL KRSMRAPRMR WTTTLHARFV 180 HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT MKNTDKAAVS SGQSDGFENG 240 STGEISVDNL LDIPNTRREE PSAHGRPATH HETNYGGLWG NSSSRGDWSS GMPSDSTARS 300 MHSFKEDMQS KSMEMLSDMN SPCISETTSL REPSLEFTLG RPQ

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MELFPAQPDL SLHISPPSSN PTPSWRRADE NMDLGFWQRT TDSTTTNHHS ITTLSMAKAE  60
KTAFELSLAH PSATDSNTMS NNLLQHPHHH PLVHEGYHQV LGLTRPIRGI PVYQHQPNSF  120
PLVPQLQQQH LCDSSTPTGF APFAPQGASR SRYLPSRFPL KRSMRAPRMR WTTTLHARFV  180
HAVELLGGHE RATPKSVLEL MDVKDLTLAH VKSHLQMYRT MKNTDKAAVS SGQSDGFENG  240
STGEISVDNL LDIPNTRREE PSAHGRPATH HETNYGGLWG NSSSRGDWSS GMPSDSTARS  300
MHSFKEDMQS KSMEMLSDMN SPCISETTSL REPSLEFTLG RPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-16	168	222	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-16	168	222	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-16	168	222	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-16	168	222	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-16	168	222	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940793.1	0.0	probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	2e-53	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2H3ZJF9	0.0	A0A2H3ZJF9_PHODC; probable transcription factor KAN2
STRING	XP_008802564.1	1e-158	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-55	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]