PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940895.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 179aa    MW: 19146.3 Da    PI: 4.6583
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940895.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.5e-171461355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr  ++ g+Wv+eIr+p   g +  r++lg++ t+e+Aa a++ a+++l+g
  XP_010940895.1 14 YRGVR--SRYGKWVSEIREP---G-KdSRIWLGTYPTPEMAAMAYDVAALALRG 61
                    9***5..779*********8...4.34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-291375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-271370IPR001471AP2/ERF domain
PROSITE profilePS5103220.5471369IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-191470IPR016177DNA-binding domain
PfamPF008478.1E-101461IPR001471AP2/ERF domain
PRINTSPR003673.7E-71425IPR001471AP2/ERF domain
CDDcd000182.80E-281471No hitNo description
PRINTSPR003673.7E-75171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAANPPATGK HQSYRGVRSR YGKWVSEIRE PGKDSRIWLG TYPTPEMAAM AYDVAALALR  60
GSGAVLNFPD AVGRHPALAS TSRTDIRAAA SAAAAAMTVP ATQRPGTSSD ATDRQCWFDG  120
TSSGGDGAKF LDEDEIFDMP QLLRSMAEGM LMTPPSWLSP SQSEDTPETS GEESLWSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17772166ATERF1
3gcc_A5e-17772166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940895.11e-128ethylene-responsive transcription factor ERF027
SwissprotQ9FJ909e-40ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2H3Z7733e-92A0A2H3Z773_PHODC; ethylene-responsive transcription factor ERF027-like
STRINGXP_008809497.16e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.16e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]