PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940930.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family BBR-BPC
Protein Properties Length: 342aa    MW: 37942.1 Da    PI: 9.857
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940930.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind367.72.1e-11213421301
       GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                     mdd  +re  r k+ +++        p++++k++++++lm+++aerd++i++rnla+sekkaa+aerdma lqrd+a+ ern+a++erdn+++al
  XP_010940930.1   1 MDDGRHREngRPKPdQFKsvhaqwmmPQHQMKDHQTMKLMAIMAERDSAIHDRNLAISEKKAALAERDMAILQRDAAIVERNNAFLERDNAIAAL 95 
                     78887777788888888899999988778****************************************************************** PP

       GAGA_bind  85 llvensla.....salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkp..kekkakkkkk 169
                     ++++++ +     +  + + ++   tk+ d+l +++   +ql+d +++  r+ ++ ea+pi++a+e+ak  k k+ r+++ ++    kk+k++kk
  XP_010940930.1  96 QYARETGMngnggN--GCSPGCTAPTKHHDHLPHVHPppSQLSDAPYDhERQVDIAEAYPISTAVESAKGCKAKRMRKENGVQaiPIKKSKSPKK 188
                     *9877766354333..333345566777777777666889********99999***********9999876666555544433113455556666 PP

       GAGA_bind 170 ksekskkkvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
                     ++++ +++ +k+ +  +                      +k+++k +dl+ln+vs+Dest+PvPvCsCtG+ + CYkWGnGGWqS+CCttt+S+y
  XP_010940930.1 189 NKRSGNDDLNKQVSIAKfhgewkgqeqvsgggdankipvTKHHWKGQDLGLNQVSFDESTMPVPVCSCTGKFHPCYKWGNGGWQSSCCTTTLSMY 283
                     5555555555555444478899************************************************************************* PP

       GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     PLPv++++r+aR++grKmS+gaf klL++LaaeG+dls+pvDLkdhWAkHGtn+++ti+
  XP_010940930.1 284 PLPVMPNKRHARVGGRKMSGGAFIKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIK 342
                     **********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1451342IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-981342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDDGRHRENG RPKPDQFKSV HAQWMMPQHQ MKDHQTMKLM AIMAERDSAI HDRNLAISEK  60
KAALAERDMA ILQRDAAIVE RNNAFLERDN AIAALQYARE TGMNGNGGNG CSPGCTAPTK  120
HHDHLPHVHP PPSQLSDAPY DHERQVDIAE AYPISTAVES AKGCKAKRMR KENGVQAIPI  180
KKSKSPKKNK RSGNDDLNKQ VSIAKFHGEW KGQEQVSGGG DANKIPVTKH HWKGQDLGLN  240
QVSFDESTMP VPVCSCTGKF HPCYKWGNGG WQSSCCTTTL SMYPLPVMPN KRHARVGGRK  300
MSGGAFIKLL SRLAAEGHDL STPVDLKDHW AKHGTNRYIT IK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940930.10.0barley B recombinant-like protein D
RefseqXP_010940931.10.0barley B recombinant-like protein D
RefseqXP_010940932.10.0barley B recombinant-like protein D
RefseqXP_010940933.10.0barley B recombinant-like protein D
RefseqXP_010940935.10.0barley B recombinant-like protein D
RefseqXP_010940936.10.0barley B recombinant-like protein D
RefseqXP_019711083.10.0barley B recombinant-like protein D
RefseqXP_029116129.10.0barley B recombinant-like protein D
RefseqXP_029116130.10.0barley B recombinant-like protein D
RefseqXP_029116131.10.0barley B recombinant-like protein D
RefseqXP_029116132.10.0barley B recombinant-like protein D
RefseqXP_029116133.10.0barley B recombinant-like protein D
SwissprotQ5VSA81e-139BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBLA0A2H3ZHQ50.0A0A2H3ZHQ5_PHODC; barley B recombinant-like protein D isoform X1
STRINGXP_008776328.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-110basic pentacysteine 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]