PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940962.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 301aa    MW: 32924.8 Da    PI: 5.6453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940962.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-203079255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  XP_010940962.1 30 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 79
                    69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-302989No hitNo description
PfamPF008472.8E-133079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303088IPR001471AP2/ERF domain
SMARTSM003803.6E-363093IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-213088IPR016177DNA-binding domain
PROSITE profilePS5103222.7483087IPR001471AP2/ERF domain
PRINTSPR003672.4E-103142IPR001471AP2/ERF domain
PRINTSPR003672.4E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDNARKFPPL RPWKKGPTRG KGGPQNASCE YRGVRQRTWG KWVAEIREPK KRTRLWLGSF  60
ATAEEAAMAY DEAARRLYGP DAYLNLPHLR STTLNSSTTI GGKSPHRFKW FPSNNFTSMI  120
PSCGLLNLNA QHNVHAIHQK LQEFKNSRPP PSSSLSSSSS SSCPGSFRSL EPPPTVETHL  180
ESSINVAVEG ASSMAIEKAP VGGAEKPQID LKEFLQQLGV IKEEESKPEG DEGAESSVVA  240
EPTQDSGGVA SEMVGFGEGD FNWDTLVEMR ALEDHSVVGD GGLQVDDLHE ELSLPISLWD  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940962.10.0dehydration-responsive element-binding protein 2E-like
SwissprotQ10R181e-78DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A2H3Z8040.0A0A2H3Z804_PHODC; dehydration-responsive element-binding protein 2F
STRINGXP_008809802.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-67ERF family protein