PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941132.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRAS

Protein Properties

Length: 773aa MW: 81800.8 Da PI: 6.2328

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941132.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	304.4	2.7e-93	407	772	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPil 91 lve+L+++Ae v++g++ a+ +Larl+++ sp g+p+ R ++yf+eAL+ + + lpp +++ + ++ +l +k+fs+vsP+l XP_010941132.1 407 LVEQLFKVAELVEAGNTVSARGILARLNHQlPSPMGKPLLRSVFYFKEALHLLTST---DALHPLPPPPSPLATpldVVLKLGTVKAFSDVSPVL 498 689***********************998***************987776...5555555555444444448888899999**** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181 +f+++t qa+le++ ++r+H++Dfdi+ G+QW a++q+La+R+ +++psl+iT+++s s++ el+ t+e+L++fA+ l++pfefnvl XP_010941132.1 499 QFTNFTSIQALLEELGAASRIHVVDFDIGVGGQWSAFMQELAQRRcttagASSPSLKITAFASRCSHHPLELHLTRENLSHFAADLNIPFEFNVL 593 ****************************************999987789******9999***********************9 PP GRAS 182 vakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +l+ ++++ L ++++ Ea+aVnl + + +++L+lvk+lsPk+v+ v++ +d+++ sF+++f++a++ +++l+ds++a XP_010941132.1 594 ---SLDPFDPSPLlSLSSgSEAIAVNLPIGSAVHP--------LAPTLLRLVKQLSPKIVISVDHGCDRSDLSFARHFVQAFQSCTVLLDSIDAA 677 ...88888888763566689*****888887........4569*****************************************999 PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 +++ e ++k+Er+l++++i+n+v ++ ++ Wr+ +++aGF pv++s+++++qa++ll++v+++g++ve++++sl l+W++ +Lvs XP_010941132.1 678 -GTDMEVANKIERFLVQPRIENAVLGHHRT----ADKMLPWRALFNSAGFVPVQFSNFTETQAECLLKRVQVRGFHVEKRQASLSLCWQRGELVS 767 .8899****************99988....78899**************************************************** PP GRAS 370 vSaWr 374 vSaWr XP_010941132.1 768 VSAWR 772 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.178	381	752	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-91	407	772	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence Send to blast
MRGMPFSLQE EGGLEVLIAG KEEKSLFWGG GGGGGCGNNK RRKGLLEGLE PRSVLDNRRS 60 PSPPTSTSTL SSSLGGGGAS SDNAGVAAVS DNLGAHKWPA TAASISTANP SMEEGRKEEW 120 AAELQPIAAA SLEGGGDKCG GVGLGAVEDW EVMLSESAAS PGQEQTFLGW IMGDIDDPAG 180 LKHHQLPPPE LDGGGTAGGA FGLVDPVFRL DPIGSLGGGG AATSISASNP SPLASSVTSA 240 GLFGPTSSSS SVVKAPTFGL ATLPNSTVFP LAPPNNLTLA RSVQPSVFYQ EPVEEKPPLL 300 GPSLLSSQYQ QSQAPQNPAF FLPLPQFDAQ PPAHLLPPQP NRHHALSVDQ MAPKTPFSDS 360 AGPDFFLRRC QPQPQAFPPP FHLQQCPKVA SGGEAAAAAA AQQQQALVEQ LFKVAELVEA 420 GNTVSARGIL ARLNHQLPSP MGKPLLRSVF YFKEALHLLT STDALHPLPP PPSPLATPLD 480 VVLKLGTVKA FSDVSPVLQF TNFTSIQALL EELGAASRIH VVDFDIGVGG QWSAFMQELA 540 QRRCTTAGAS SPSLKITAFA SRCSHHPLEL HLTRENLSHF AADLNIPFEF NVLSLDPFDP 600 SPLLSLSSGS EAIAVNLPIG SAVHPLAPTL LRLVKQLSPK IVISVDHGCD RSDLSFARHF 660 VQAFQSCTVL LDSIDAAGTD MEVANKIERF LVQPRIENAV LGHHRTADKM LPWRALFNSA 720 GFVPVQFSNF TETQAECLLK RVQVRGFHVE KRQASLSLCW QRGELVSVSA WRC

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence Send to blast

MRGMPFSLQE EGGLEVLIAG KEEKSLFWGG GGGGGCGNNK RRKGLLEGLE PRSVLDNRRS  60
PSPPTSTSTL SSSLGGGGAS SDNAGVAAVS DNLGAHKWPA TAASISTANP SMEEGRKEEW  120
AAELQPIAAA SLEGGGDKCG GVGLGAVEDW EVMLSESAAS PGQEQTFLGW IMGDIDDPAG  180
LKHHQLPPPE LDGGGTAGGA FGLVDPVFRL DPIGSLGGGG AATSISASNP SPLASSVTSA  240
GLFGPTSSSS SVVKAPTFGL ATLPNSTVFP LAPPNNLTLA RSVQPSVFYQ EPVEEKPPLL  300
GPSLLSSQYQ QSQAPQNPAF FLPLPQFDAQ PPAHLLPPQP NRHHALSVDQ MAPKTPFSDS  360
AGPDFFLRRC QPQPQAFPPP FHLQQCPKVA SGGEAAAAAA AQQQQALVEQ LFKVAELVEA  420
GNTVSARGIL ARLNHQLPSP MGKPLLRSVF YFKEALHLLT STDALHPLPP PPSPLATPLD  480
VVLKLGTVKA FSDVSPVLQF TNFTSIQALL EELGAASRIH VVDFDIGVGG QWSAFMQELA  540
QRRCTTAGAS SPSLKITAFA SRCSHHPLEL HLTRENLSHF AADLNIPFEF NVLSLDPFDP  600
SPLLSLSSGS EAIAVNLPIG SAVHPLAPTL LRLVKQLSPK IVISVDHGCD RSDLSFARHF  660
VQAFQSCTVL LDSIDAAGTD MEVANKIERF LVQPRIENAV LGHHRTADKM LPWRALFNSA  720
GFVPVQFSNF TETQAECLLK RVQVRGFHVE KRQASLSLCW QRGELVSVSA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	442	772	37	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941132.1	0.0	scarecrow-like protein 27
TrEMBL	A0A3Q0I4L6	0.0	A0A3Q0I4L6_PHODC; scarecrow-like protein 6
STRING	XP_008794809.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-104	GRAS family protein