PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941146.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 345aa    MW: 36320.9 Da    PI: 7.4606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941146.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012206228123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C k F++   L  H  +H
  XP_010941146.1 206 YQCGTCQKFFRSYQALGGHRASH 228
                     9***********99999998887 PP
2zf-C2H214.30.00012261283123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+++Fs+   L  H r+H
  XP_010941146.1 261 HRCTICSRTFSSAQALGGHKRSH 283
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-7326IPR007087Zinc finger, C2H2
SMARTSM003550.098426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.32E-8205228No hitNo description
PfamPF139123.5E-8205230IPR007087Zinc finger, C2H2
SMARTSM003550.29206228IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099206228IPR007087Zinc finger, C2H2
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SuperFamilySSF576674.32E-8256283No hitNo description
Gene3DG3DSA:3.30.160.600.001260283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0084261283IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-11261285IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596261288IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MERHRCKLCF RRFSSGRALG GHMRSHVTPR ATRAPPLPPS PSASSSSSAA AEAAAAAGLG  60
YGLQENPREG FRLVDREFSS SFAAADGRDG GGGSASVVQD RESETESSLP LPLRCLSKRP  120
RRPQETAAAA AAEAEPLSSI SDVSSEEDVA RCLMLLSRDA WARSIAGEEA EDQQSGGCDE  180
DYNDEDGDDG IHGSARSRRS GRRSRYQCGT CQKFFRSYQA LGGHRASHKK VAGGGCVPTA  240
GCQIGGEVFS KTNADRTPSP HRCTICSRTF SSAQALGGHK RSHLASSSSA TAADHSPPLA  300
PPPLSANSTS TNLSSKGFID LNQPAPLEEE VELSALSDAT MLQSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941146.10.0zinc finger protein ZAT1
TrEMBLA0A2H3Y8J81e-130A0A2H3Y8J8_PHODC; zinc finger protein ZAT1-like
STRINGXP_008794794.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.17e-20C2H2-like zinc finger protein