PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941148.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 628aa    MW: 69162.1 Da    PI: 6.6708
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941148.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix109.22.7e-34432516186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev aLi++r+++e+r+++  lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k+k+++kkr +++s+tcpyf+ql+
  XP_010941148.1 432 RWPRAEVEALIQVRSRLESRFQEPGLKGPLWEEVSATMAAMGYHRSAKRCKEKWENINKYFRKTKDSSKKR-PRNSKTCPYFHQLD 516
                     8*********************************************************************8.9999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.259425489IPR017877Myb-like domain
CDDcd122032.79E-28431496No hitNo description
PfamPF138371.1E-24431518No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MQSGYGSVSE MQQFMMESCG SSIFSISAAS PNPSADIHAA APQPLKYHPL HPHHHHQPPH  60
PQPPPPPPHH FSPFHPIPIT QQLFQQSHQF QLLQHQHENS AGATAAAGGG PSFLAPAMNF  120
KLAANESSGG GSHEGLNDDD GGSESRLHHH WQREEESAIK EPSWRPLDID YINRNNKRCK  180
EKETETPTNK YSKKTKEGAE PDHGGHITGG SNYKLFSELE AICKPGVCSL GGGGGANQTG  240
SGSALTGDET ALMPTATNPP GILTADHHVG GSETSAGEEA TARKFSKGSG RKKRKRRQQK  300
KQQLSSVMAF FENLVKQLME HQENLHQKFL EVMERRDQER TLREEAWRRQ EAAKSSHEAA  360
ARAHDRVLAS SREAAIISFL EKTTGETLHL PEKLRFPSQL SEEPGKLEAE TTQNPPTEPS  420
NNANKVPFNT SRWPRAEVEA LIQVRSRLES RFQEPGLKGP LWEEVSATMA AMGYHRSAKR  480
CKEKWENINK YFRKTKDSSK KRPRNSKTCP YFHQLDQLYS KSLNKSHPAS SSSPNANVAA  540
GGAIASGTAG DRRKDNSELL DAIVVSTDQQ GFKFPEMSSL HDFGFNGKGD DNSELHRNVG  600
SNGEEDDEED EEEGGGGEEG EEREEGEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282297RKFSKGSGRKKRKRRQ
2289297GRKKRKRRQ
3290295RKKRKR
4290296RKKRKRR
5290297RKKRKRRQ
6291296KKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941148.10.0trihelix transcription factor GT-2
TrEMBLA0A2H3Y8110.0A0A2H3Y811_PHODC; trihelix transcription factor GTL1-like
STRINGXP_008794787.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-55Trihelix family protein