PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941178.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 315aa MW: 34845.5 Da PI: 9.3175

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941178.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.7	8.6e-32	59	163	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f+kv tpsdv+k++rlv+pk++ae++ + + ++ l +ed++g+ W ++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ XP_010941178.1 59 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldpsMAD--KGLSLCFEDRTGKPWPFRYSYWNSSQSYVMTKGWSRFVKDKRLDAGDTVSFSRGvGEa 151 89***********************99976444..5667********************************************666999 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s+++l++ ++r+ XP_010941178.1 152 SRGRLFIDWRRR 163 *******997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-41	49	166	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.81E-28	57	153	No hit	No description
SuperFamily	SSF101936	1.7E-30	57	163	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.903	59	164	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-21	59	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-29	59	163	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MELAHGRGDR YHYCRREDQE GASKNPSFTP SSSSSSSFSL TGLPHAEAAA RPIETEHMFD 60 KVVTPSDVGK LNRLVIPKQY AEKYFPLDPS MADKGLSLCF EDRTGKPWPF RYSYWNSSQS 120 YVMTKGWSRF VKDKRLDAGD TVSFSRGVGE ASRGRLFIDW RRRHNSPHHH LLPLPNPAAM 180 QLPFTTTITP FAGLFAPPVP AMWNSPSPSI GGDGSSYVYF RSVCPPPHVR VQVGDGGVVG 240 VPMVLDSVPV IHGAAETKRL RLFGVNLECS EPEDLSDNRR LPLMQPKPPP SPLQWRIGTV 300 GALESTVVST GNKLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-57	54	163	3	113	B3 domain-containing transcription factor NGA1
5os9_B	7e-57	54	163	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941178.1	0.0	B3 domain-containing protein Os03g0120900
Swissprot	Q6EU30	6e-69	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	A0A2H3ZCE9	1e-170	A0A2H3ZCE9_PHODC; B3 domain-containing protein Os03g0120900-like
STRING	XP_008811395.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	4e-60	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]