PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941226.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family LSD
Protein Properties Length: 143aa    MW: 14815.3 Da    PI: 7.5014
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941226.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.97.9e-142751125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP+GA+sV+Ca+C++V
  XP_010941226.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                    ************************9 PP
2zf-LSD146.65.7e-156690125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+t+
  XP_010941226.1 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                    ***********************97 PP
3zf-LSD140.15.9e-13104128125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C+ lL+Y +GA sV+Ca+C++V
  XP_010941226.1 104 CGNCQMLLMYQYGAGSVKCAVCNFV 128
                     ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-122454IPR005735Zinc finger, LSD1-type
PfamPF069435.1E-112751IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-527125IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.0E-146392IPR005735Zinc finger, LSD1-type
PfamPF069439.5E-136690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.1E-10101131IPR005735Zinc finger, LSD1-type
PfamPF069436.9E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT APVPFTPPNG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTAVPPPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGAGSV  120
KCAVCNFVTS VGASPITEHK PNN
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941225.12e-98protein LSD1 isoform X2
RefseqXP_010941226.12e-98protein LSD1 isoform X2
SwissprotQ0J7V93e-79LSD1_ORYSJ; Protein LSD1
TrEMBLA0A2H3YIT73e-92A0A2H3YIT7_PHODC; protein LSD1 isoform X1
STRINGXP_010269986.13e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-62lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]