PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941513.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 258aa    MW: 29385.1 Da    PI: 5.8241
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941513.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l+++++ +G g+W+t ar  g++Rt+k+c++rw++yl
   XP_010941513.1 23 RGPWTVEEDLKLINYIAIHGEGRWNTLARGAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding52.31.4e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010941513.1  76 RGNISPEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.2841870IPR017930Myb domain
SuperFamilySSF466892.85E-3120117IPR009057Homeodomain-like
SMARTSM007176.8E-162272IPR001005SANT/Myb domain
PfamPF002495.9E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-222477IPR009057Homeodomain-like
CDDcd001673.03E-122570No hitNo description
PROSITE profilePS5129424.53371125IPR017930Myb domain
SMARTSM007177.2E-1575123IPR001005SANT/Myb domain
PfamPF002491.4E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2378124IPR009057Homeodomain-like
CDDcd001672.34E-1180119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEVPGRVFGS ATQPSAEEMD LRRGPWTVEE DLKLINYIAI HGEGRWNTLA RGAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIS PEEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKQAKQLNC DVDSKKFKDT MRYLWMPRLM ERIRAASGSS LQGPDPQLPA CPPASSSTDL  180
TRMQFSSPVA TDSFVGDCCF SGCIPDGELN FGDGIQEARL EMVDGWCDNE GLLDFEHGGG  240
WGQNSWGLED IWFVEQQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26201254108B-MYB
1h8a_C1e-252012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941513.10.0transcription factor MYB78-like
SwissprotQ2QZJ81e-85JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2H3Y4W61e-105A0A2H3Y4W6_PHODC; transcription factor MYB2-like
STRINGXP_008793362.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-83myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]