PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941614.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 1193aa MW: 134752 Da PI: 7.6058

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941614.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.2	5.4e-08	109	140	60	91
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHelap 91 C+a+++v ++++g+w v++++leH+H+l p XP_010941614.1 109 ERCRAMMEVVRKESGRWAVSRVVLEHTHQLEP 140 68***************************975 PP
2	FAR1	71.6	1.8e-22	427	510	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y +YA +GFsvrk +s rn + +r +vCs+eg+r +++ k r+r+etrtgC ++ +k +++gk++vt+++ +HnH+la XP_010941614.1 427 EYYVKYAGGLGFSVRKGWWDRSARNV-TRSRVYVCSREGFRPKNEAK-----RPRPETRTGCLSRMAIKITSSGKYRVTEFVPDHNHQLA 510 69******************7766.99********998777.....**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-5	109	140	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.7E-20	427	510	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-28	608	702	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.866	887	923	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-4	898	925	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1193 aa Download sequence Send to blast
MVLISEITEE AAKKEGEPKE GDGEPEEEGP PEERAETEER PQEPAAIDPG ELAPPSAEDP 60 KEDGPPPAGK MLHNEYALRV AYIMRNYLYM RQGGAAASGA TGGGAAGEER CRAMMEVVRK 120 ESGRWAVSRV VLEHTHQLEP PPDPAGALAG GGLVPRVDME FDSISAAKAY YSTYGEKMGF 180 KAQSGSGKRS RGNRILIMQR FLCSKGSYPP YGNAADGAAR KRKRGPYKKR AQKDAKEAQK 240 HGEVVEVIQV ESSTERAGAV GDEHGGEVQS GQLKKGAVLA EKDMMPKEPA TEINSRKDSA 300 AVGKGQDGGK VPLVSNPAQS RLLRELGIRV SRYTHEERRD IILKYMQKRS NRQAVDRSIK 360 IPSRQALAER RQRGVGGKFL SKEEMQTLNR QEEQAEEEPE LPEEVVANAG GVPIVGMVFE 420 NEDKAYEYYV KYAGGLGFSV RKGWWDRSAR NVTRSRVYVC SREGFRPKNE AKRPRPETRT 480 GCLSRMAIKI TSSGKYRVTE FVPDHNHQLA TPLDIQMLKS QKLLTKVQPR VCQTACLIPS 540 GYKNYLRVKR AKDMQVGDAG ALLEYLQKMK GDNPSFYYAI QVDEYDQMTN VFWADAKSMI 600 DYHYFGDVVC FDTSYRANDY GRPFALFIGM NHHKQTVIFG AAFLYDETVE SFKWLFETFK 660 TAMSGKQPKT ILTDRCAVIS DAIAAVWPGT THHFCGWQIY QNAVKHLARV FEGSENFAHD 720 FSRCIYDFED EEEFLAAWNS MLEKYNLKDN EWLTKLYEER EKWALAYSRH VFCADIKGTL 780 REETLSNVLK EYLNSEKDLS LFFKLYEMLV EERRYAEVQA DYHANQGTPR IPPLRLLWQA 840 ANAYTPAVFE MFRREFELFM DCMVYSCGEV GTLSDYEATV KDKTKEYFLR FDSSDGSVIC 900 SCRKFERVGI QCCHVLKVLD FRNIKELPPQ YILKRWRKDA KAGSMRESHG FILDGDPKTS 960 QSNRYSSLCR ILYKIAARAA VNEDTFTLMV NQSDHLLEQV EQILQTRLLE KPPIANAPRG 1020 QHSNLIESGD VHHDRNNETQ KVSGRKRNNG GVRRRHQSEQ EINNRQKVRK GQPEEAEVAP 1080 RDNEPHVAPN TIPSQPRNPS NQFLAPNHFM QGPYVTAHQF GLGTTQGFHP MTQFGQDSPA 1140 SALQQQPFHG SAHLTQGYPA PDIHALQFVG SNPQLDHQGG DQGHCAIPVW DFL

Sequence ? help Back to Top

Protein Sequence Length: 1193 aa Download sequence Send to blast

MVLISEITEE AAKKEGEPKE GDGEPEEEGP PEERAETEER PQEPAAIDPG ELAPPSAEDP  60
KEDGPPPAGK MLHNEYALRV AYIMRNYLYM RQGGAAASGA TGGGAAGEER CRAMMEVVRK  120
ESGRWAVSRV VLEHTHQLEP PPDPAGALAG GGLVPRVDME FDSISAAKAY YSTYGEKMGF  180
KAQSGSGKRS RGNRILIMQR FLCSKGSYPP YGNAADGAAR KRKRGPYKKR AQKDAKEAQK  240
HGEVVEVIQV ESSTERAGAV GDEHGGEVQS GQLKKGAVLA EKDMMPKEPA TEINSRKDSA  300
AVGKGQDGGK VPLVSNPAQS RLLRELGIRV SRYTHEERRD IILKYMQKRS NRQAVDRSIK  360
IPSRQALAER RQRGVGGKFL SKEEMQTLNR QEEQAEEEPE LPEEVVANAG GVPIVGMVFE  420
NEDKAYEYYV KYAGGLGFSV RKGWWDRSAR NVTRSRVYVC SREGFRPKNE AKRPRPETRT  480
GCLSRMAIKI TSSGKYRVTE FVPDHNHQLA TPLDIQMLKS QKLLTKVQPR VCQTACLIPS  540
GYKNYLRVKR AKDMQVGDAG ALLEYLQKMK GDNPSFYYAI QVDEYDQMTN VFWADAKSMI  600
DYHYFGDVVC FDTSYRANDY GRPFALFIGM NHHKQTVIFG AAFLYDETVE SFKWLFETFK  660
TAMSGKQPKT ILTDRCAVIS DAIAAVWPGT THHFCGWQIY QNAVKHLARV FEGSENFAHD  720
FSRCIYDFED EEEFLAAWNS MLEKYNLKDN EWLTKLYEER EKWALAYSRH VFCADIKGTL  780
REETLSNVLK EYLNSEKDLS LFFKLYEMLV EERRYAEVQA DYHANQGTPR IPPLRLLWQA  840
ANAYTPAVFE MFRREFELFM DCMVYSCGEV GTLSDYEATV KDKTKEYFLR FDSSDGSVIC  900
SCRKFERVGI QCCHVLKVLD FRNIKELPPQ YILKRWRKDA KAGSMRESHG FILDGDPKTS  960
QSNRYSSLCR ILYKIAARAA VNEDTFTLMV NQSDHLLEQV EQILQTRLLE KPPIANAPRG  1020
QHSNLIESGD VHHDRNNETQ KVSGRKRNNG GVRRRHQSEQ EINNRQKVRK GQPEEAEVAP  1080
RDNEPHVAPN TIPSQPRNPS NQFLAPNHFM QGPYVTAHQF GLGTTQGFHP MTQFGQDSPA  1140
SALQQQPFHG SAHLTQGYPA PDIHALQFVG SNPQLDHQGG DQGHCAIPVW DFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	224	ARKRKRG
2	471	475	KRPRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941615.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A3Q0IH99	0.0	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008811123.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-118	FAR1-related sequence 5