PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941812.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

M-type_MADS

Protein Properties

Length: 174aa MW: 18965.1 Da PI: 9.1085

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941812.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.4	3.3e-17	4	48	3	47
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ie k ++ f+kRr+gi+KKA EL vLC+a++ vi +s+ gk + XP_010941812.1 4 IEKKEALHICFTKRRQGIFKKAGELAVLCGAQITVITLSPGGKPF 48 88899999********************************99855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.376	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-15	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-19	2	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-20	3	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MGKIEKKEAL HICFTKRRQG IFKKAGELAV LCGAQITVIT LSPGGKPFSF GQPSTDAVIA 60 RYLDPGRHQV PIPITTSLEI RLRYYLKYCK LGEQSGGGLW WWEAPIDGLD LEELVVMKGA 120 IEELYKAILK KANQPTSAGE AVQGMPQKPS LAMLNGSYHL PVSSVPGSDP AFPI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941812.1	1e-126	agamous-like MADS-box protein AGL61

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1224	36	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	8e-26	AGAMOUS-like 61