PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941828.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 533aa MW: 61171.7 Da PI: 6.0539

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941828.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.7	1.4e-11	225	277	37	90
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +eg+r+ +k + e+++r +a +rtgC+a + +kk+kdgkw+ ++++ HnH+l+ XP_010941828.1 225 NEGFRNFRKGD-EERQRIQADSRTGCQALIAIKKTKDGKWVALQVVETHNHPLT 277 46777777777.999999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-8	226	277	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-32	395	489	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MSNRENEVST NPTSRKKEAR RTTRRDANQS AEHALNAPAT QADIVGVCLV VAQLIQQQQQ 60 TRAASQPVPS LELYYERFRK LNPPLFEGGP DLMAAKIWIR EMEKMFDALQ YPENVKVRIG 120 RMVRDYPIKK KDSSKTSKLV DQKQQENARV FALTQQDASA SNQIVADNST QTTMNDLENN 180 LLLSEEYNNR LCELMLEEEN DKLDKVEGMK DDGTANENSN ETEDNEGFRN FRKGDEERQR 240 IQADSRTGCQ ALIAIKKTKD GKWVALQVVE THNHPLTTPS KTRNHRSHGH ISNGEAEMIK 300 NMHSVGIRTN LIMSVMAVEV GGSQNVSFRE KDIRNFCQKE WQKGDAAAML EYLERQQVDN 360 PSFFYSIQAD SEGHMTNFFW ADARSRIDYH YFGDVVCFDP TYLTNRYGMP FVPIIGIDHH 420 YQTIIFGGAL LFDEREESFA WVFSTWMKAM EGKRPKVILT DQESAIGGAI SLVLPESRHR 480 FCIWHIMRNG LKNIPHVFNK YKGFENDFTD CLYGGETVEE FEVNWGSLLD KYN

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MSNRENEVST NPTSRKKEAR RTTRRDANQS AEHALNAPAT QADIVGVCLV VAQLIQQQQQ  60
TRAASQPVPS LELYYERFRK LNPPLFEGGP DLMAAKIWIR EMEKMFDALQ YPENVKVRIG  120
RMVRDYPIKK KDSSKTSKLV DQKQQENARV FALTQQDASA SNQIVADNST QTTMNDLENN  180
LLLSEEYNNR LCELMLEEEN DKLDKVEGMK DDGTANENSN ETEDNEGFRN FRKGDEERQR  240
IQADSRTGCQ ALIAIKKTKD GKWVALQVVE THNHPLTTPS KTRNHRSHGH ISNGEAEMIK  300
NMHSVGIRTN LIMSVMAVEV GGSQNVSFRE KDIRNFCQKE WQKGDAAAML EYLERQQVDN  360
PSFFYSIQAD SEGHMTNFFW ADARSRIDYH YFGDVVCFDP TYLTNRYGMP FVPIIGIDHH  420
YQTIIFGGAL LFDEREESFA WVFSTWMKAM EGKRPKVILT DQESAIGGAI SLVLPESRHR  480
FCIWHIMRNG LKNIPHVFNK YKGFENDFTD CLYGGETVEE FEVNWGSLLD KYN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941828.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7YXG2	1e-124	A0A1U7YXG2_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010245238.1	1e-124	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-85	FAR1-related sequence 5