PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942395.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 232aa    MW: 25476.2 Da    PI: 8.8337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942395.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-2062111255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg++ taeeAa a+++a+++++g
  XP_010942395.1  62 HYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTYNTAEEAAIAYDEAALRFKG 111
                     7********.**********94....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3261120IPR001471AP2/ERF domain
CDDcd000182.25E-3262120No hitNo description
SMARTSM003801.3E-3662125IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2262120IPR016177DNA-binding domain
PROSITE profilePS5103224.63262119IPR001471AP2/ERF domain
PfamPF008471.6E-1462111IPR001471AP2/ERF domain
PRINTSPR003672.0E-116374IPR001471AP2/ERF domain
PRINTSPR003672.0E-1185101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVSALAHVIS SSLSGVGVGV GRSESVVIQS ELNPAMAGPE SGSMERELSQ PSEEQGNVRR  60
RHYRGVRQRP WGKWAAEIRD PRKAARVWLG TYNTAEEAAI AYDEAALRFK GTKAKLNFPE  120
RVQGRTDLGF LVSRGIPERP PQPITPPPTA SYPDLLQYAQ LLQSRDEDLH SVASGLFVTD  180
SFTSGSSQVS YHSTSGSSQE FLDFFSQMRS SSSSSSRQPR GDQKDKDSNQ QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2661123467ATERF1
3gcc_A7e-2661123467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942395.11e-169ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH547e-44EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2H3ZB451e-118A0A2H3ZB45_PHODC; ethylene-responsive transcription factor ERF113-like isoform X1
STRINGXP_008811102.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-26related to AP2 6l
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]