PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010942431.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 1201aa MW: 134869 Da PI: 7.5198

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010942431.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.7	1.9e-08	113	144	60	91
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHelap 91 Cka+++v ++++g w v+kl+ eHnHel p XP_010942431.1 113 DRCKAMMEVVRKEHGMWTVSKLVMEHNHELLP 144 58***************************975 PP
2	FAR1	79.1	8.2e-25	436	522	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGFsvrk ks rn + +r +vCs+eg+r ++ + +++++r+etrtgC a++ +k + +gk+++++++ +HnH+la XP_010942431.1 436 EFYVKYAGTVGFSVRKGWWDKSARNV-TRSRVYVCSREGFRPRNMAN--DAKKPRPETRTGCLAHMAIKITPSGKYCISEFVADHNHQLA 522 6*******************7766.99********999888..99***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-6	113	144	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.1E-22	436	522	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-29	620	713	IPR018289	MULE transposase domain
Pfam	PF04434	8.3E-4	888	932	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.804	888	935	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0025	910	937	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1201 aa Download sequence Send to blast
MVLISEIAGD NPNAEEEGRK EEEGPAEEEL KVDEEKDSPE KPQEPAESGG ASGEVKESPA 60 KGPQGSSAGQ THYNEYALRV AYIMRSYLSM REAGVAGAGQ GPPTREAAVP AGDRCKAMME 120 VVRKEHGMWT VSKLVMEHNH ELLPNKDAGG DGAGLVPAVG MEFDSVEVAK AFYYGYGEKS 180 GFKARTGSNR RSAGSGALIM QRFLCWRGNY LMYRKNLDAS AGKRKRGPYK RRARRLAEEA 240 AAAAQSARKD GDVVEVIQVE SSTEKGGMAG DDHGLEVQSG PPVKEQVVVE KDVGQKPSAP 300 AVGMPVPAVA AAARKDDGKA IPLTNTAQSR LLRELGVRAF RYTQEERRDI ILKYTMKKTN 360 RQGVESPVKV PSQQALAERR QRGIGGRFLS RDESQTSSSQ DKRMEAEPAV PAEDAANLGG 420 EPKVGMVFAN EDKAYEFYVK YAGTVGFSVR KGWWDKSARN VTRSRVYVCS REGFRPRNMA 480 NDAKKPRPET RTGCLAHMAI KITPSGKYCI SEFVADHNHQ LAAPLDIQML RSQRLLAKVQ 540 PEGCQNTSLI PADYKNYLRS KRMKDMKHGD AGALMEYLQK MKSENPSFFY AIQVDERDQL 600 TNIFWVDAKS MVDYHYFGDV VCFDTAYKTN DYDRPFTLFL GVNHHKQIIV FGAALLYDET 660 IESFKWLFET FKTAMCGKQP ETILTDCCAA VRDAVAAVWP GTMHRLCLWQ IHQDAIKRLS 720 HVFEGSETFA LDFSRCLYDC EDEEEFLLAW ETMLERYGLK DNEWLGKLYE EREKWALVYR 780 REIFCADIAN ALRNEKLNSV LKEYLKLETD LWSFFNQYDR LVEERRYAEQ QANYQANQGT 840 SRIPPLRLLW QAANVYTPAV FDMFRLEFEL TVNCTVYSCA EVGTVSQYEV TVKDKTKQQF 900 VRFDSADGTA ICSCKKFDFA GVQCCHVLKI LDLRNIKELP LQYVLKRWRK DAKVGPIREN 960 HSFALDGDPE SSIPKRYGSL CRILYKIAAM AAETAEAYSF MESQSDQLLE QVERILQARL 1020 LEMPSPSTAS KVQPHNLVHN KSNIGESPRA SGKRKKNGDA HRRNQNGFAS TKRQKGRQEI 1080 ATRSDELPAS SDEIPAQPRN PPNQFFAPSH YMQGPYVSGH QFGLSTVQGF HNMTQFSQMQ 1140 ESSTTLLQQQ PFHGNTQLGQ NDVQACPAAD VNSLQFGGSN PQLGHQSSDQ GHYSIPVWDF 1200 L

Sequence ? help Back to Top

Protein Sequence Length: 1201 aa Download sequence Send to blast

MVLISEIAGD NPNAEEEGRK EEEGPAEEEL KVDEEKDSPE KPQEPAESGG ASGEVKESPA  60
KGPQGSSAGQ THYNEYALRV AYIMRSYLSM REAGVAGAGQ GPPTREAAVP AGDRCKAMME  120
VVRKEHGMWT VSKLVMEHNH ELLPNKDAGG DGAGLVPAVG MEFDSVEVAK AFYYGYGEKS  180
GFKARTGSNR RSAGSGALIM QRFLCWRGNY LMYRKNLDAS AGKRKRGPYK RRARRLAEEA  240
AAAAQSARKD GDVVEVIQVE SSTEKGGMAG DDHGLEVQSG PPVKEQVVVE KDVGQKPSAP  300
AVGMPVPAVA AAARKDDGKA IPLTNTAQSR LLRELGVRAF RYTQEERRDI ILKYTMKKTN  360
RQGVESPVKV PSQQALAERR QRGIGGRFLS RDESQTSSSQ DKRMEAEPAV PAEDAANLGG  420
EPKVGMVFAN EDKAYEFYVK YAGTVGFSVR KGWWDKSARN VTRSRVYVCS REGFRPRNMA  480
NDAKKPRPET RTGCLAHMAI KITPSGKYCI SEFVADHNHQ LAAPLDIQML RSQRLLAKVQ  540
PEGCQNTSLI PADYKNYLRS KRMKDMKHGD AGALMEYLQK MKSENPSFFY AIQVDERDQL  600
TNIFWVDAKS MVDYHYFGDV VCFDTAYKTN DYDRPFTLFL GVNHHKQIIV FGAALLYDET  660
IESFKWLFET FKTAMCGKQP ETILTDCCAA VRDAVAAVWP GTMHRLCLWQ IHQDAIKRLS  720
HVFEGSETFA LDFSRCLYDC EDEEEFLLAW ETMLERYGLK DNEWLGKLYE EREKWALVYR  780
REIFCADIAN ALRNEKLNSV LKEYLKLETD LWSFFNQYDR LVEERRYAEQ QANYQANQGT  840
SRIPPLRLLW QAANVYTPAV FDMFRLEFEL TVNCTVYSCA EVGTVSQYEV TVKDKTKQQF  900
VRFDSADGTA ICSCKKFDFA GVQCCHVLKI LDLRNIKELP LQYVLKRWRK DAKVGPIREN  960
HSFALDGDPE SSIPKRYGSL CRILYKIAAM AAETAEAYSF MESQSDQLLE QVERILQARL  1020
LEMPSPSTAS KVQPHNLVHN KSNIGESPRA SGKRKKNGDA HRRNQNGFAS TKRQKGRQEI  1080
ATRSDELPAS SDEIPAQPRN PPNQFFAPSH YMQGPYVSGH QFGLSTVQGF HNMTQFSQMQ  1140
ESSTTLLQQQ PFHGNTQLGQ NDVQACPAAD VNSLQFGGSN PQLGHQSSDQ GHYSIPVWDF  1200
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1053	1074	RKKNGDAHRRNQNGFASTKRQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010942431.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
Refseq	XP_010942448.1	0.0	protein FAR1-RELATED SEQUENCE 4 isoform X2
TrEMBL	A0A3Q0IH99	0.0	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008787331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1-related sequence 5