PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942825.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 239aa    MW: 25005 Da    PI: 7.8928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942825.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk Fs+   L  H  +H
  XP_010942825.1  89 YKCSVCGKAFSSYQALGGHKASH 111
                     9***********99999998887 PP
2zf-C2H212.30.00051146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+++F++   L  H r+H
  XP_010942825.1 146 HECSVCHRTFPTGQALGGHKRRH 168
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.4E-988111No hitNo description
SMARTSM003550.004989111IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-589111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-1389113IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2489116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-9141168No hitNo description
PfamPF139124.7E-13145170IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224146168IPR007087Zinc finger, C2H2
SMARTSM003550.073146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MALETSAPVP ASVLKSSVAE SREAAVAPQQ VEGWAKRKRS KRHRFFDHHS TEEEYLALCL  60
MMLAHGGGEA GQRLPFPTPP PPPETRQKYK CSVCGKAFSS YQALGGHKAS HRKPNIPGGG  120
AEEVDSIGST VASTISSSGG GSGRAHECSV CHRTFPTGQA LGGHKRRHYE GGATAGATGG  180
SGVTTLEAAS SGPRVFDLNL PPLPEFGFEA AESWCLAAAD DEEVQSPLSL KKPALSIST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942825.11e-174zinc finger protein ZAT10
TrEMBLA0A2H3X2262e-77A0A2H3X226_PHODC; zinc finger protein ZAT10-like
STRINGXP_008777133.14e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-41salt tolerance zinc finger