PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942895.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 413aa    MW: 45146.2 Da    PI: 5.0663
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942895.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_010942895.1  4 LCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                    6*****************************65677777766 PP
2zf-B_box25.23.3e-084688442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42
                      C+++  ++++  C + ++ lC++C  ++H g    H+++++
  XP_010942895.1 46 LLCDRCITQPAIVRCMEENVSLCQNCDWNGHGGsasgHKRQTI 88
                    57*****************************669999998765 PP
3CCT652.2e-22356399144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+ktRkFeKkirY+sRKa+A+ R RvKGrFvk+ 
  XP_010942895.1 356 RDSAVMRYKEKKKTRKFEKKIRYASRKARADVRRRVKGRFVKAG 399
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
SMARTSM003362.7E-10147IPR000315B-box-type zinc finger
CDDcd000215.63E-8447No hitNo description
PROSITE profilePS501198.7454388IPR000315B-box-type zinc finger
CDDcd000215.27E-44788No hitNo description
SMARTSM003361.84888IPR000315B-box-type zinc finger
PfamPF062036.2E-17356398IPR010402CCT domain
PROSITE profilePS5101715.587356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGLLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCDR CITQPAIVRC  60
MEENVSLCQN CDWNGHGGSA SGHKRQTINC YSGCPSSADL SRIWSFILEF PPMADSNCEQ  120
GMGLMSINEN SVSDFWGAPD NSSTRNIASA GKMNDLETAN KLNPWIDSSS TSAGNPMLYS  180
ADQAAGSVDS TTHKLGFTGT KDLALSKDDF YEDLNMDDVD LNFENYEELF GASLSNAEQL  240
FDDAGIDSFF ELKEISAANS DCQGEFVTEA KPMQATYSNA VSADSVMSNP GSKADPNLCF  300
PARQARSSLS LSFSGLTGES SAGDYQDCGI SSVLFMGEPP WCPTAPEGSS HTPASRDSAV  360
MRYKEKKKTR KFEKKIRYAS RKARADVRRR VKGRFVKAGE AYDYDPLCKT RSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942895.10.0zinc finger protein CONSTANS-LIKE 10 isoform X2
SwissprotQ9LUA91e-133COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2H3YSZ00.0A0A2H3YSZ0_PHODC; zinc finger protein CONSTANS-LIKE 10 isoform X2
STRINGXP_008803173.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-105B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]