PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943177.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 547aa    MW: 58382.3 Da    PI: 6.1323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943177.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS225.82e-691735463374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     elLl++A++v+s+d++ a+a+Larl++   +++g+++qR+a++f+eAL a l        +  +  + s+ + +++++a+k+fs++s +++f+ +
  XP_010943177.1 173 ELLLRAAHCVESRDFATAHAILARLNQYlPASAGSALQRVAFHFKEALLALLPL----PNRPATEPALSTVEIVRRISAHKAFSDLSLVPQFASF 263
                     79*************************9899999****************9987....2223333334445699********************* PP

            GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                     taNq +l+a++ +         + vH iDf+i+ G+QW ++ q  a+R+   ++pp lRiT+v++   ++++e+   +e+L++fA+ lg+++  +
  XP_010943177.1 264 TANQILLDALDAAaaasgggghSSVHLIDFEIGLGGQWSSFAQIVAARSharAPPPGLRITAVVP---EETRETALAAENLRDFARGLGLRLAVD 355
                     *********998777777777799*************************9888899*********...468899999****************** PP

            GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.......sFlerflealeyysal 267
                     ++++  l +l l+ +r+ pgE +a  l  +++rll  + +++    ++L+ v++ sP+vvv+v+ e +++++       s+ + ++  +e+++a+
  XP_010943177.1 356 FVHVGGLGMLALSGIRLVPGEPVAAVLTPAIFRLLGGPEPSA----ALLRYVRRASPRVVVFVDTEWSCSGGaaagqlpSLRRSVAGGIEHCAAV 446
                     **999******************************5555555....5*******************99955557899989999************ PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                     ++s+ea  ++ +ee ++vEr +++++i ++v    ++   r    + Wre+l  aG+ pv +se+a++ a+ ++r+ ++dgy+v  ++gs+vl W
  XP_010943177.1 447 LESVEAV-GPGEEEVQWVERTVVRPRIFSAVG---SW---RSGWGGGWREALAGAGMAPVGFSEFAVSLAEWMVRRAPVDGYNVARREGSMVLSW 534
                     ****998.89999**************99985...55...556889************************************************* PP

            GRAS 363 kdrpLvsvSaWr 374
                     ++++L ++SaWr
  XP_010943177.1 535 RGKELAATSAWR 546
                     ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.033145526IPR005202Transcription factor GRAS
PfamPF035147.1E-67173546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MKPSKALIDS PQSQTTVQFS LPSKLLDSSP NSNSPLPTNL FYEPTSVLDP HLTSSPATAV  60
GVGGGSDVPS HPWDSHHQHQ LLLPPPLPPP PPPPFDEWDP VTWLLSEKDD LSTFPKPPHH  120
PELHFSEGDY PSYASLFDGP SDLPDAFDPL PPFSDAAVTI FSPPPVFDRT HLELLLRAAH  180
CVESRDFATA HAILARLNQY LPASAGSALQ RVAFHFKEAL LALLPLPNRP ATEPALSTVE  240
IVRRISAHKA FSDLSLVPQF ASFTANQILL DALDAAAAAS GGGGHSSVHL IDFEIGLGGQ  300
WSSFAQIVAA RSHARAPPPG LRITAVVPEE TRETALAAEN LRDFARGLGL RLAVDFVHVG  360
GLGMLALSGI RLVPGEPVAA VLTPAIFRLL GGPEPSAALL RYVRRASPRV VVFVDTEWSC  420
SGGAAAGQLP SLRRSVAGGI EHCAAVLESV EAVGPGEEEV QWVERTVVRP RIFSAVGSWR  480
SGWGGGWREA LAGAGMAPVG FSEFAVSLAE WMVRRAPVDG YNVARREGSM VLSWRGKELA  540
ATSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2017754525378Protein SCARECROW
5b3h_A9e-2017754524377Protein SCARECROW
5b3h_D9e-2017754524377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943177.10.0scarecrow-like protein 15
TrEMBLA0A2H3Y9S50.0A0A2H3Y9S5_PHODC; scarecrow-like protein 15
STRINGXP_008795618.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-69GRAS family protein