PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943178.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 556aa MW: 57325.6 Da PI: 8.9204

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943178.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010943178.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12	0.00067	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_010943178.1 144 WKCDKCSKKYAVQSDWKAHSKTC 166 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	67	90	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.86E-7	67	90	No hit	No description
PROSITE profile	PS50157	10.949	68	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	109	139	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.9E-4	132	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.86E-7	139	164	No hit	No description
SMART	SM00355	150	144	164	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MPVELENSSV MTFSNSGSGE ASVSSGQQQA PPPPPPPAKK KRNLPGMPDP DAEVIALSPK 60 TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEARKRVYV CPEPSCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KSQTNNTAAS APAAPENQKA EDDGKAAAAP APAPAPPAPE 240 KSLPPAAMPG AGLSRQLGAP PEQQREPENP PAGMLQYMPP APPPPPSSIT IGSNNSSGTT 300 SSSGGSSSGT STSLFASLFA SASATAAAQS TTFSDLIGAM SRTDRSLATE APSLCLSTNG 360 PASLFSQPPQ ERRPFLPPPP PPSPHMSATA LLQKAAQMGA AATSSSSFLR GFGLATSTAG 420 HPEGLNDGGF HWRPQQQQLE PEPTPILSAG LGLGLPYDTA AAAAAAAAGL PDLMMGPPPL 480 FGPKPATLDF LGLGMGPVGG AATGGLSALI TSIGGGGLDM GSGAAAAASA GRFGGGSSPG 540 KAWEGAERKP NSPAIL

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MPVELENSSV MTFSNSGSGE ASVSSGQQQA PPPPPPPAKK KRNLPGMPDP DAEVIALSPK  60
TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEARKRVYV CPEPSCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KSQTNNTAAS APAAPENQKA EDDGKAAAAP APAPAPPAPE  240
KSLPPAAMPG AGLSRQLGAP PEQQREPENP PAGMLQYMPP APPPPPSSIT IGSNNSSGTT  300
SSSGGSSSGT STSLFASLFA SASATAAAQS TTFSDLIGAM SRTDRSLATE APSLCLSTNG  360
PASLFSQPPQ ERRPFLPPPP PPSPHMSATA LLQKAAQMGA AATSSSSFLR GFGLATSTAG  420
HPEGLNDGGF HWRPQQQQLE PEPTPILSAG LGLGLPYDTA AAAAAAAAGL PDLMMGPPPL  480
FGPKPATLDF LGLGMGPVGG AATGGLSALI TSIGGGGLDM GSGAAAAASA GRFGGGSSPG  540
KAWEGAERKP NSPAIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	140	206	3	71	Zinc finger protein JACKDAW
5b3h_F	2e-35	140	206	3	71	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943180.1	0.0	zinc finger protein ENHYDROUS
Refseq	XP_019701497.1	0.0	zinc finger protein ENHYDROUS
Swissprot	Q9LVQ7	1e-154	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A2H3YAF9	0.0	A0A2H3YAF9_PHODC; protein indeterminate-domain 2-like
STRING	XP_008795616.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-101	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]