PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943287.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 259aa MW: 27634.5 Da PI: 7.5028

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943287.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	153.8	3.2e-48	68	163	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 r q++f+Pianv+rim+ +lP +akis+dak t+ ecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGf+dyv pl+ yl++yre+eg+ XP_010943287.1 68 RGQEHFMPIANVIRIMRMILPMHAKISDDAKVTILECVSEYISFITGEANQRCQREQRKTIAAEDVIWAMGKLGFDDYVGPLRRYLQRYREIEGD 162 6799*****************************************************************************************99 PP NF-YB 97 k 97 + XP_010943287.1 163 H 163 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.7E-43	65	164	IPR009072	Histone-fold
SuperFamily	SSF47113	1.29E-34	70	168	IPR009072	Histone-fold
Pfam	PF00808	8.2E-23	73	137	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.6E-13	101	119	No hit	No description
PRINTS	PR00615	2.6E-13	120	138	No hit	No description
PRINTS	PR00615	2.6E-13	139	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAGGGDANPV FPRLPRISSG TAWPFADGIN ASQTGPAGVL QAGSAAGTTV SPGGAATVPA 60 AQPPVNLRGQ EHFMPIANVI RIMRMILPMH AKISDDAKVT ILECVSEYIS FITGEANQRC 120 QREQRKTIAA EDVIWAMGKL GFDDYVGPLR RYLQRYREIE GDHRIGLQGG DHFPIVKQRR 180 HPQNTAAPSV CSQPPLMCSS MPRLLPSSSL MMPPTAPPLR FNHLCGEGSG SGYFLGMYGG 240 DDGAGASDSQ APPMADFFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-50	65	158	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943287.1	0.0	nuclear transcription factor Y subunit B-3-like isoform X2
TrEMBL	A0A2H3YH18	1e-109	A0A2H3YH18_PHODC; nuclear transcription factor Y subunit B-6-like
STRING	XP_008798409.1	1e-110	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-53	nuclear factor Y, subunit B6