PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943404.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 356aa    MW: 38874.6 Da    PI: 8.7723
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943404.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.9e-27104186271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_010943404.1 104 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpncnmvtpdqpdyDGKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 186
                     689********...*****999*******************************99**********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-1262356IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.6E-4499191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-31103186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.9E-24105186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-21106187IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144589.55E-44191294IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.73E-42192305No hitNo description
SMARTSM011386.5E-73193354IPR014889Transcription factor DP, C-terminal
PfamPF087813.4E-41194328IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVAGNRQNED GNKSTASIPK PHGGGGRSSW GTPAFSGGQS ASTSGSVGSP SSRSELAAAT  60
PVSESTFVRL NHLDIHGDDA GSSLGAVSGK KKKRGARAVG GDKSGRGLRQ FSMKVCEKVE  120
SKGRTTYNEV ADELVAEFTD PNCNMVTPDQ PDYDGKNIRR RVYDALNVLM AMDIISKDKK  180
EIQWKGLPRT SLNDIEELKA ERIGLKSKIE KKTAYLQDLQ DQFVGLQNLI QRNEQLYKSG  240
NAPSGAVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDAFV LKAMRFRERE  300
HNNSALEPSS NGGECPSTLG MYQHHVQQPS RPNSTNKLPS SPPIPGILKA RVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3997191193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943404.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-145DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3WXE30.0A0A2H3WXE3_PHODC; transcription factor-like protein DPB
STRINGXP_008775137.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-125Transcription factor DP