PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943413.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28893.4 Da    PI: 8.2934
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943413.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-19119173256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q   Le+ F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 173
                     788899***********************************************98 PP
2HD-ZIP_I/II1201.3e-38119207190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k+q++lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr +++l++en+rL+kev+eL+ +
  XP_010943413.1 119 RKKLRLTKDQSALLEDKFKEQSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCEVLKRYCETLSDENRRLQKEVHELK-A 207
                     69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.281115175IPR001356Homeobox domain
SuperFamilySSF466891.67E-17115176IPR009057Homeodomain-like
SMARTSM003891.6E-15117179IPR001356Homeobox domain
PfamPF000464.3E-16119173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-17119173IPR009057Homeodomain-like
CDDcd000862.08E-16119176No hitNo description
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
SMARTSM003402.7E-21175218IPR003106Leucine zipper, homeobox-associated
PfamPF021833.0E-10175208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDNGDTCDTG LALGLNYNAS GPCSDGHGHR EPIVKLERSS SNMVSVEPSL TLGLSDDTHG  60
SIKSTEEARV ARQSSPHSTV SSFSDGHPSN TKKENSIKSE EAQKFSFRVS DEEEEGSARK  120
KLRLTKDQSA LLEDKFKEQS TLNPKQKQAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEID  180
CEVLKRYCET LSDENRRLQK EVHELKALRF ASPVYMQFPA TALTMCPSCK KITSTGSEGS  240
KAPEPHSMFM NPFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943413.10.0homeobox-leucine zipper protein HAT22
SwissprotP466045e-72HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2H3YHI91e-150A0A2H3YHI9_PHODC; homeobox-leucine zipper protein HAT22-like
STRINGXP_008798887.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-74HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]