PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943415.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 185aa MW: 21109.2 Da PI: 8.0639

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943415.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.7	5e-14	76	164	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v+t+s v + +l++pk+ + ++ ++ + ++++We+++ +++ +r + +GWk+F+ +n+Lk gD + ++l++++ ++ v+++r XP_010943415.1 76 VMTKSQVQAPFQLTIPKSIWMLL--PFAC--VPVVLSYRNKTWEMRYYGDRNLRR--FDSGWKHFAVDNNLKIGDACFLELMDDQHLKFQVQILR 164 78888888888999998887222..2223..346678899*****55777777..8********************99999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-18	69	164	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-17	69	164	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.59E-16	71	164	No hit	No description
Pfam	PF02362	1.4E-12	73	165	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.265	73	166	IPR003340	B3 DNA binding domain
SMART	SM01019	4.4E-4	73	166	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MWHSKDALSL AKQKTDHSVC SSNTHRRHCK APVAARSLSS QESTNRANLC LPSDSATIDE 60 KDEIVPLSGK PYFACVMTKS QVQAPFQLTI PKSIWMLLPF ACVPVVLSYR NKTWEMRYYG 120 DRNLRRFDSG WKHFAVDNNL KIGDACFLEL MDDQHLKFQV QILRGDIPRE IVESGCSFDT 180 PIMIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010910571.2	1e-128	B3 domain-containing protein Os04g0386900 isoform X1
Refseq	XP_019701572.1	1e-126	B3 domain-containing protein Os11g0197600
TrEMBL	A0A2H3YR23	1e-106	A0A2H3YR23_PHODC; B3 domain-containing protein Os04g0386900-like
STRING	XP_008802551.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	9e-09	B3 family protein