PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943420.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 363aa    MW: 40577.2 Da    PI: 8.7433
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943420.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32186239255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_010943420.1 186 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 239
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.51E-15183240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28184240IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23186239IPR006447Myb domain, plants
PfamPF002492.3E-7187238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSN PTPSWRKANE NLDLGFWRRA MDSNTTTTTN PFTTTSNLHS  60
ITNRSIAEPD NTAFELSLAH PSAIDSTTMS NSTLLHHPHH HHHHLHLHHH HHHPLVHEGY  120
HQDLGLMRPI RGIPVYQHQP NPFPLVPQLQ QQSLCDSSTA TNFFPFASRS RFLSSRFPVK  180
RSMRAPRMRW TTTLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV  240
KNTDKPAVSS GQSDGFENGS TGEISDDNLL DLHKHRGAEP SAQHGRSAMH HGNNYGGLWS  300
NSSSRGGWYN GIASDSTTGS MHSFKKDMQS KSIEILSDVN SSCLSETSSP KKPSLEFTLG  360
RSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16187241458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943420.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6163e-56KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A3Q0IEJ50.0A0A3Q0IEJ5_PHODC; probable transcription factor KAN2
STRINGXP_008802564.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-55G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]