PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943446.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bZIP
Protein Properties Length: 343aa    MW: 36364.6 Da    PI: 6.3236
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943446.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.31.5e-22230292163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN++L+ e+++++ke+++l s++
  XP_010943446.1 230 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRADSLKEENSSLRAEVNRIRKEYEQLLSQN 292
                     89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165962.8E-5064202No hitNo description
Gene3DG3DSA:1.20.5.1707.7E-19224291No hitNo description
SMARTSM003381.0E-22230294IPR004827Basic-leucine zipper domain
PfamPF001709.6E-21230292IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.679232295IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-11233290No hitNo description
CDDcd147026.30E-24235285No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPPYGTPPHP YVMYPPGGLY AHPSMPPGSH PFNPYAMPSP NGNAETGAVP GGTEMDGKSS  60
EGKERSPLKR SKGSLGSLNM ITGKNNNEPG KTSGASANGG FSQSGESGTE SSSEGSDANS  120
QNDSQPKTSG GQESFDETSH RGNHTPGSQN GGTRMLSQAV LGQTIPIMPM PAAGATSGVA  180
GPTTNLNIGM DYWGAPSSSS LPPMHGKVPA SAVAGAVVPG APSELWMQDE RELKRQRRKQ  240
SNRESARRSR LRKQAECEEL AQRADSLKEE NSSLRAEVNR IRKEYEQLLS QNTSLKERLG  300
EMQQGTDNPR LDGDEQNSGD DNHKRHSDSD AQAGEKDPVQ SGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246252RRSRLRK
2246253RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019701578.10.0bZIP transcription factor 16 isoform X3
SwissprotB6E1071e-123BZP1B_WHEAT; bZIP transcription factor 1-B
SwissprotQ501B21e-122BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2H3ZZL20.0A0A2H3ZZL2_PHODC; bZIP transcription factor 16-like isoform X1
STRINGXP_008810162.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-109basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]