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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_010943591.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 146aa MW: 16601.9 Da PI: 7.2139 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.8 | 0.00035 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C+ C+k F + +L H+ +H
XP_010943591.1 6 YICSFCNKAFQTLQSLGGHQTSH 28
89*****************9998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 5.33E-7 | 4 | 31 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 5 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| Pfam | PF13912 | 1.4E-9 | 6 | 31 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.596 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 146 aa Download sequence Send to blast |
MAGPPYICSF CNKAFQTLQS LGGHQTSHRR EIKEMRKQHE TFMEAQHLRP RPLRASSGSP 60 GMRMVPLTPN YAYWEALRAA DQSPVVINFM EIHSPEVSQQ HPQPSQMYKM APSSEETITD 120 PMLTLWGEVH RGEEVNSVNP DVTLKL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010943591.1 | 1e-107 | transcriptional regulator SUPERMAN-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP20809 | 6 | 6 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G05120.1 | 2e-08 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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