PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943699.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SBP

Protein Properties

Length: 1030aa MW: 113021 Da PI: 7.0602

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943699.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.4e-42	147	223	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC adls+ak+yhrrhkvCe+hsk+++++v +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn rrrk+++ XP_010943699.1 147 CQVEGCGADLSNAKDYHRRHKVCEMHSKTSMAIVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNLRRRKTNP 223 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.0E-34	140	208	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.223	144	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-38	146	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-30	147	220	IPR004333	Transcription factor, SBP-box
CDD	cd00204	8.29E-8	782	913	No hit	No description
SuperFamily	SSF48403	9.79E-6	810	918	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.5E-5	812	913	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MEPKVGGKRQ QFYGAGTSSG LGKKGLEWDL NGWKWDGNHC VATPLNYVSE DRWNKQLMSA 60 PAARGLSNGS SFCPEETDLG ITGKGKAELE KRRRVTVAAD DEPSDGSLTL KLGGHASELV 120 EADVANWEGK NGNRSKLAGG NSSRSSCQVE GCGADLSNAK DYHRRHKVCE MHSKTSMAIV 180 GNVMQRFCQQ CSRFHLLQEF DEGKRSCRRR LAGHNLRRRK TNPDANTAVG SLNDNHASSF 240 LLISLLRVLA NLQSDSSGQS KDQDLLTHLL RNLANLAGSS DARNLPGLPQ ASQDLHKFGI 300 SAGTSSEAGN VLHGNGLVVQ ESSRPLSLPS KVACTTGFPV PSMRPLDHSA SAVASVEIHL 360 EKNIAEASLG ETALTIPAPC SATLVPVEDV LSVKAQDLCS SQSILHAESI LERDRIKDFD 420 LNVYSDEQDG EEACDLPIAL ATQATGSPNC PSWMPQQSSP NQTSHNSDSS SVQSLSSNRD 480 IQSRTDRIVF KLFGKNPNDV PLVLQTQIFN WLSHSPTDME SYIRPGCIIL TVYLRLAESL 540 WEELSHDLNS SLNRLLCISH DDFWRTGWVY ARVPHRMAFI YNGQVVLDTP LPLRSPNPCN 600 ILCITPIAAA VSAKVNFTVK CFNLALSASR LLCAFEGEYL VQEATQNFLG GSNTGKEHEG 660 CQSFSFHCSL PRAMGRGFIE VEDDGLSSAS FPFIVAEEDM CSEICMLESA INVSSCGDLL 720 DDRMDAINAR NQAMDFLQEM GWLLRRSHLR SKSEQYSCSN VFSMTRFRWL MSFALNREWC 780 AVVKKLLDIL FQGNIDLGGQ SPVQFALSED LLHRAVRRKS KPMVELLLRY KLNTATEKTG 840 PDSFLFGPAM LGPSNITPLH IAATISGAER LLDALTDDPG QLGIRAWSSV HDSTGFTPED 900 YARSRGHISY IQLVRKKISD KPDKGHVVLH INGNDDATYK QAGPCSGKPS GFQIDKSKIK 960 PAPPPYCKRC NQQLAYSRSM SSSLLYRPAM LAMVGIAAVC VCVALLFKGP PEVLLVYPPF 1020 RWELLDYGYI

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MEPKVGGKRQ QFYGAGTSSG LGKKGLEWDL NGWKWDGNHC VATPLNYVSE DRWNKQLMSA  60
PAARGLSNGS SFCPEETDLG ITGKGKAELE KRRRVTVAAD DEPSDGSLTL KLGGHASELV  120
EADVANWEGK NGNRSKLAGG NSSRSSCQVE GCGADLSNAK DYHRRHKVCE MHSKTSMAIV  180
GNVMQRFCQQ CSRFHLLQEF DEGKRSCRRR LAGHNLRRRK TNPDANTAVG SLNDNHASSF  240
LLISLLRVLA NLQSDSSGQS KDQDLLTHLL RNLANLAGSS DARNLPGLPQ ASQDLHKFGI  300
SAGTSSEAGN VLHGNGLVVQ ESSRPLSLPS KVACTTGFPV PSMRPLDHSA SAVASVEIHL  360
EKNIAEASLG ETALTIPAPC SATLVPVEDV LSVKAQDLCS SQSILHAESI LERDRIKDFD  420
LNVYSDEQDG EEACDLPIAL ATQATGSPNC PSWMPQQSSP NQTSHNSDSS SVQSLSSNRD  480
IQSRTDRIVF KLFGKNPNDV PLVLQTQIFN WLSHSPTDME SYIRPGCIIL TVYLRLAESL  540
WEELSHDLNS SLNRLLCISH DDFWRTGWVY ARVPHRMAFI YNGQVVLDTP LPLRSPNPCN  600
ILCITPIAAA VSAKVNFTVK CFNLALSASR LLCAFEGEYL VQEATQNFLG GSNTGKEHEG  660
CQSFSFHCSL PRAMGRGFIE VEDDGLSSAS FPFIVAEEDM CSEICMLESA INVSSCGDLL  720
DDRMDAINAR NQAMDFLQEM GWLLRRSHLR SKSEQYSCSN VFSMTRFRWL MSFALNREWC  780
AVVKKLLDIL FQGNIDLGGQ SPVQFALSED LLHRAVRRKS KPMVELLLRY KLNTATEKTG  840
PDSFLFGPAM LGPSNITPLH IAATISGAER LLDALTDDPG QLGIRAWSSV HDSTGFTPED  900
YARSRGHISY IQLVRKKISD KPDKGHVVLH INGNDDATYK QAGPCSGKPS GFQIDKSKIK  960
PAPPPYCKRC NQQLAYSRSM SSSLLYRPAM LAMVGIAAVC VCVALLFKGP PEVLLVYPPF  1020
RWELLDYGYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	138	220	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943698.1	0.0	squamosa promoter-binding-like protein 12
Refseq	XP_010943699.1	0.0	squamosa promoter-binding-like protein 12
TrEMBL	A0A2H3XYJ5	0.0	A0A2H3XYJ5_PHODC; squamosa promoter-binding-like protein 6
STRING	XP_008790476.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	1e-173	squamosa promoter-binding protein-like 12