PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010943729.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family DBB
Protein Properties Length: 345aa    MW: 37114.6 Da    PI: 5.0563
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010943729.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-061251540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40
                     C+ ++e  + l+C+ +   lC  C  + H      H++v
  XP_010943729.1 12 PCDYCGEAAAVLYCRADAARLCLPCDRHVHAAnalaHKHV 51
                    7*******9*********************6688998875 PP
2zf-B_box201.5e-065588537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                     C++++ +++   C  ++  lC+dC  ++  g   H
  XP_010943729.1 55 ACDNCGAHPAAARCAADGLALCPDCDAHG--GggaH 88
                    6************************9965..23345 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.6E-8855IPR000315B-box-type zinc finger
PROSITE profilePS501199.214853IPR000315B-box-type zinc finger
CDDcd000214.03E-71143No hitNo description
SMARTSM003360.735693IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGEEKRSLRD FPCDYCGEAA AVLYCRADAA RLCLPCDRHV HAANALAHKH VRSLACDNCG  60
AHPAAARCAA DGLALCPDCD AHGGGGAHPR TPLEDFSGCP SALDLAASWG IDLAAKEAAC  120
PPRSAPDQLL SNWSSIDSIL AGDPVSRDLC VPCAPDIPSR VKLQKSPVGK QALFQQLTEL  180
AKSDSVAASM PSKLSPRTPC RTTAGGSKDF RGSSQPMPYT SLFMLPPSEC TELNRLVEDE  240
DLLWDCGLTN HSPQIWDFNI GKSRDDDQSS ALEIGYYANS GGFMIKNYND LLKENSFATT  300
KLLEDMYDTN YPSANEDILS SNICHVPSQN LSTLNATSKW KSNSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943729.20.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2H3XZ250.0A0A2H3XZ25_PHODC; zinc finger protein CONSTANS-LIKE 14-like
STRINGXP_008790714.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.15e-46B-box type zinc finger protein with CCT domain