PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010943949.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

SBP

Protein Properties

Length: 178aa MW: 20029.1 Da PI: 8.6705

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010943949.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.3e-42	67	144	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+eak+yhrrhkvCe+hska+ v+v+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++ XP_010943949.1 67 CCQAEKCTADLTEAKRYHRRHKVCEAHSKASIVIVAGLRQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSSS 144 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.0E-35	60	129	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.419	65	142	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.06E-38	66	145	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.1E-32	68	141	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MERRPPAEPK RSGKEKPRKD AAAMDDDGDD DEEEVVAGEE EDRKRRPPPP SSAARRGSGG 60 GGTSQPCCQA EKCTADLTEA KRYHRRHKVC EAHSKASIVI VAGLRQRFCQ QCSRFHELSE 120 FDDSKRSCRR RLAGHNERRR KSSSESQGEG SSQCRQADPE ERIQSLPGNP TCKHFQIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-37	61	141	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	46	DRKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943949.1	1e-125	squamosa promoter-binding protein 1
Swissprot	Q38740	8e-43	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A2H3Z9B5	4e-70	A0A2H3Z9B5_PHODC; squamosa promoter-binding protein 1-like
STRING	XP_008810376.1	7e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8524	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	9e-39	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]