PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011069739.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 149aa    MW: 16633.6 Da    PI: 9.7331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011069739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-172978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  XP_011069739.1 29 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 78
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.9972986IPR001471AP2/ERF domain
SMARTSM003802.6E-362992IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-202987IPR016177DNA-binding domain
PRINTSPR003671.1E-113041IPR001471AP2/ERF domain
CDDcd000182.56E-263087No hitNo description
Gene3DG3DSA:3.30.730.101.3E-293087IPR001471AP2/ERF domain
PfamPF008471.4E-103078IPR001471AP2/ERF domain
PRINTSPR003671.1E-116888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEGSCCTSSS SSTDQNPKRK PRQHTQDKPY RGIRMRKWGK WVAEIREPNK RSRIWLGSYS  60
SPVAAARAYD TAVFYLRGPS ARLNFPECIV HDPQQHDLSA AAIRKKATEV GAMVDALQAA  120
AHPRGNSGRV AHEKPDLNEY PSPETSEDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152686263ATERF1
3gcc_A4e-152686263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622PKRKPRQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011069739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069739.11e-109ethylene-responsive transcription factor ERF011-like
SwissprotO221742e-49ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2G9FZ015e-76A0A2G9FZ01_9LAMI; Uncharacterized protein
STRINGMigut.N02735.1.p2e-70(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.13e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]