PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011069762.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 325aa    MW: 37147.1 Da    PI: 5.4643
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011069762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++  +s
  XP_011069762.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSIFS 58
                    68*******************************************98776 PP
2K-box17.32e-07102173173
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                     yq++++   ++++ e+ qqe+ k k ++e +++++R +  +  e +sl e +  eq Le+ lk++R +K+ +l
  XP_011069762.1 102 YQAATSPGMNDSQVEEIQQEMLKCKCQLEDMEKKLRIYEVDPSEIISLCEAEYREQVLEENLKQVRVRKH-VL 173
                     66677777999*********************************************************96.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.338161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-30280IPR002100Transcription factor, MADS-box
CDDcd002655.64E-37275No hitNo description
PRINTSPR004043.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.5E-261055IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSIFSGN  60
RSIEEIMARY VNLPEHERGR LQNQEYLQRA LGKLKSEADR NYQAATSPGM NDSQVEEIQQ  120
EMLKCKCQLE DMEKKLRIYE VDPSEIISLC EAEYREQVLE ENLKQVRVRK HVLQDQYNSP  180
AAQTSQVMNL GSEATDINVL AARNPDNVLD WLPQRDPQVQ ILNFLDSNGL LPLRDQPQRI  240
DGILQQSLTL VHAPSVHVHN HLSPSRSMED DAQRPEFGQV IDVNLSPWAE LYPAGNDPFP  300
TAQPRERALL EQFLSQLTPV NQDHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15180179MEF2 CHIMERA
6bz1_B2e-15180179MEF2 CHIMERA
6bz1_C2e-15180179MEF2 CHIMERA
6bz1_D2e-15180179MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011069762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069762.10.0agamous-like MADS-box protein AGL104 isoform X2
TrEMBLA0A2G9HCX40.0A0A2G9HCX4_9LAMI; MADS box transcription factor
STRINGMigut.C00517.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-54AGAMOUS-like 104